Stackebrandtia nassauensis: Snas_1177
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Entry
Snas_1177 CDS
T01194
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Snas_1177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sna03021
]
Snas_1177
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_1177
Enzymes [BR:
sna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Snas_1177
Transcription machinery [BR:
sna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Snas_1177
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Snas_1177
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF8118
Motif
Other DBs
NCBI-ProteinID:
ADD40887
UniProt:
D3QB70
LinkDB
All DBs
Position
1263760..1267641
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRIRFKGIICERCGVEVTRSKVRRERMGHIELAAAVTHIWYFKGVPSRLGYLLDI
APKDLEKIIYFAAYVITSVDSEARHRDLATLENEIAAEKRQMENGRDAEVEKRAAKLEAD
LAELEAEGAKADVRRKVKDGGEREMRQIRDKAQREIDRLEEVIDTFRKLEPKQLIGDEML
FRELHDRFGEYFTGSMGAEAVKELLANLDLTAELENLRDIIANGKGQKKIRALKRLKVVA
PFATSGSNPMGMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVANEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PAVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSTESQAEARILMLSANNILKPSDGRPVTMPTQDMIIGLYHLTHRREGLPGEGR
AFSSVSEAMMAYDRGELHLQAPVAIRVEGVPSIDTGNGPEPVEDAESTAALTVQTTLGRV
IFNEALPTDYRFVNYEVRKGQLSEIVNDLAERYTKVQLGASLDALKAAGFHWATWSGITI
GYADVVGPKAKAAILERHEKDADRIEKQYQRGLMTAEERRGELIEIWTKATNEIAKEMDT
DLPQENPLWQMINSGARGNMLQLRQIAAIRGLVANPKGEIIPRPIKSSYREGLTVLEYFI
STHGSRKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCETERAVRIPLATEVDGQWVA
HENAETSVYARTLAEDLKDAKGKLLAAEGVDLTQPIVDILVAAGVKEVRVRSVLTCESQL
GVCAACYGRSMPTGQKVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRV
QEIFEARIPKGKAPIAEAAGTVRIEDADKSRKIIITPDDGTDEIVLDKLSRRTRLRAHDG
DHIGVGEKLTEGTIDPHELLRVLGPRQVQSHLVDQVQDVYRSQGVLIHDKHIEIIVRQML
KRVTIIDSGTTEFLPGSLVDRVVFEGENRRIVAEGGEPASGRPQLMGITKASLATDSWLS
AASFQETTKVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEEAKSRV
YSMGGYEDPVPAFGFGAPSSNAVPLDDFDIGQF
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtcaacttcttcgacgaactgcgcatcggcctggcgaccgccgaggacatc
cgccagtggtcccacggcgaggtcaagaagcccgagaccatcaactaccggaccctgaag
ccggaaaaggacggcctgttctgcgagaagatcttcgggccgacccgcgactgggagtgc
tactgcggcaagtacaagcgcatccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgttccaaggtgcgtcgtgagcgcatgggccacatcgagctggccgccgcg
gtcacccacatctggtacttcaagggcgttccctcccggctgggctacctgctggacatc
gcgcccaaggacctcgagaagatcatctacttcgccgcctacgtgatcacgtcggtggac
tccgaggcccggcaccgcgacctggcgaccctggagaacgagatcgccgccgagaagcgg
cagatggagaacggccgcgacgccgaagtcgagaagcgcgccgccaagctggaggccgac
ctggccgagctggaggccgaaggcgccaaggccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgccagatccgtgacaaggcgcagcgtgagatcgaccgcctggaa
gaggtcatcgacaccttccgcaagctggagcccaagcagctcatcggtgacgagatgctg
ttccgcgagctgcacgaccggttcggggagtacttcaccggttccatgggcgccgaggcc
gtcaaggaactgctggccaacctcgacctcaccgccgagctggagaacctgcgcgacatc
atcgccaacggcaagggtcagaagaagatccgcgccctgaagcgactgaaggtcgtggcc
ccgttcgcgaccagcggctccaacccgatgggcatggtcctggactgcgtcccggtgatc
ccgccggagctgcgcccgatggtgcagctggacggtggccgcttcgccacctccgacctc
aacgacctgtaccgccgggtcatcaaccgcaacaaccggctcaagcgactgatcgacctg
ggcgcgcccgagatcatcgtcgccaacgagaagcggatgctgcaggagtcggtggacgcc
ctgttcgacaacggccgtcgcggccgcccggtcaccggaccgggtaaccgcccgctgaag
tcgctgtccgacatgctgaagggcaagcagggccggttccgtcagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagcccttcgtcatgaagcggctg
gtcgacctcaaccacgcccagaacatcaagtccgccaagcggatggtggagcgggcccgc
cccgcggtgtgggacgtcctggaagaggtcatcaccgagcacccggtgctgctgaaccgc
gcgccgaccctgcaccggctgggcatccaggccttcgaaccgcaactggtcgagggcaag
gccatccagatccacccgctggtgtgcaccgcgttcaacgccgacttcgacggtgaccag
atggcggtccacgtgccgctgtccaccgagtcgcaggccgaggcgcggatcctgatgctg
tcggccaacaacatcctcaagccgtccgacggccgtccggtcaccatgcccacgcaggac
atgatcatcggtctgtaccacctgacccaccgtcgcgagggactgccgggcgaaggccgg
gcgttctcctcggtgtcggaggcgatgatggcctacgaccgcggcgaactgcacctgcag
gcgccggtggcgatccgggtcgagggcgttccgtccatcgacaccggcaacggccccgag
ccggtcgaggacgccgagtcgaccgccgcgctcaccgtgcagacgaccctgggacgggtc
atcttcaacgaggcgctgccgaccgactaccgcttcgtcaactacgaggtccgcaagggc
cagctgtcggagatcgtcaacgacctggccgagcgctacaccaaggtgcagctgggcgcg
tccctggacgcgttgaaggcggccggtttccactgggccacctggtcgggcatcacgatc
ggctacgccgacgtcgtcgggcccaaggccaaggcggccatcctggagcggcacgagaag
gacgccgaccggatcgagaagcagtaccagcgcggtctgatgaccgccgaggaacgccgc
ggcgagctgatcgagatctggaccaaggcgaccaacgagatcgccaaggagatggacacc
gacctgccgcaggagaacccgctgtggcagatgatcaactccggcgcgcgaggcaacatg
ctgcagctgcggcagatcgccgcgatccgtggcctggtggccaacccgaagggtgagatc
atcccgcgccccatcaagtcctcctaccgcgagggcctgacggtgctggagtacttcatc
tccacccacggttcccgaaagggtctggccgacacggcgctgcgtaccgcggactccggt
tacctgacccgtcgtctggtggacgtctcgcaggacgtcatcgtccgcgaggaggactgc
gagaccgaacgcgccgttcggatcccgctggccaccgaggtggacgggcagtgggtcgcg
cacgagaacgccgagacctcggtgtacgcgcgcacgctggccgaggacctcaaggacgcc
aagggcaagctgctggcggccgagggcgtcgacctgacccagccgatcgtcgacatcctg
gtggcggccggtgtcaaggaggtgcgggtccgcagcgtcctgacctgtgagtcgcagctg
ggcgtctgtgccgcctgctacggccgctcgatgccgaccggtcagaaggtcgacatgggc
gaggccgtcggcatcatcgcggcccagtccatcggtgagcccggtacccagctgacgatg
cgtaccttccacaccggtggtgtggccggggacgacatcacgcagggtctgccgcgtgtc
caggagatcttcgaagcgcgtatccccaaggggaaggcgccgatcgccgaggcggccggc
accgtgcgcatcgaggacgccgacaagtcccgcaagatcatcatcacgccggacgacggc
accgacgagatcgtgctggacaagctgtcccgccggacccggctgcgggcccacgacggc
gaccacatcggcgtcggcgagaagctcaccgagggcaccatcgacccgcacgagctgttg
cgggtgctgggtccgcgtcaggtgcagtcgcacctggtggaccaggtgcaggacgtgtac
cgctcgcagggcgtgctcatccacgacaagcacatcgagatcatcgtccgccagatgctc
aagcgggtcacgatcatcgactcgggcacgacggagttcctgcccggctcgctggtcgac
cgggtggtcttcgagggcgagaaccgtcgcatcgtggccgagggcggcgagccggcctcc
ggccgtccgcagctgatgggtatcaccaaggcgtcgctggccaccgactcgtggctgagc
gcggcctccttccaggagaccaccaaggtgctgaccgacgcggcgatcaacgccaagtcg
gactccctcatcggtctgaaggagaacgtcatcatcggaaagctcatcccggcgggtacc
ggcatcagcaagtaccgcaacgtccgggtcgagcccaccgaggaggcgaagtcccgcgtg
tactccatgggtggctacgaggacccggtgcccgcgttcggcttcggcgccccgtcgtcc
aacgccgtcccgctggacgacttcgacatcggacagttctag
DBGET
integrated database retrieval system
