Stackebrandtia nassauensis: Snas_1400
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Entry
Snas_1400 CDS
T01194
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Snas_1400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_1400
Enzymes [BR:
sna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Snas_1400
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Snas_1400
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Snas_1400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
Zn_ribbon_8
NFACT_N
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
ADD41107
UniProt:
D3PV54
LinkDB
All DBs
Position
complement(1483938..1484798)
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AA seq
286 aa
AA seq
DB search
MPELPEVEALADFLRRRAVSHEVKRVDVASITALKTFDPPPTALHGRRITAVDRHGKFLD
LDADGTHLIFHLARAGWLRWNDKLAATPLRPGKHPLALRLALDDGSGFDLSEAGTKKRLA
VYVVSDPAQVPGIAGLGPDPLAESFTEAAFAAVLSGRRTQIKGLLRDQKLIAGIGNAYSD
EILHAARMSPFKLADSLTDTDVSVLYEAMVDTLRTAVAASSGSAAKDLKAHKHDSLRVHG
RAGQPCPVCGDTIAEVSFADSALQYCPTCQTGGRKLADRRMSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctacccgaggtggaggcgctcgcggacttcctgcgccgccgggcggtgtcg
cacgaggtcaaacgcgtcgacgtcgcctcgatcaccgcgctgaagaccttcgacccgccc
ccgacggcgctgcacggccgccggatcaccgccgtggaccggcacggcaagttcctcgac
ctggacgccgacggcacccacctgatcttccacctggcccgcgccggttggctgcgctgg
aacgacaagctcgcggccacgccgctgcggcccggcaaacacccgctggcgctgcggctg
gccctcgacgacggttccgggttcgacctgtccgaggccggaacgaagaaacggctggcc
gtgtacgtcgtgtccgaccccgcgcaggtccccggcatcgccggtctcgggcccgatccg
ctggccgagtcgttcaccgaggcggcgttcgcggcggtgctgtcgggccgccgcacccag
atcaagggcctgctgcgggaccagaaactgatcgcgggcatcggcaacgcctactccgac
gagatcctgcacgccgcccggatgtcgccgttcaagctcgccgactcgctcaccgacacc
gacgtgtccgtcctctatgaagcgatggtcgacacgctgcggaccgcggtggcggcgtcg
tcgggttcggcggccaaggatctcaaggcgcacaagcacgacagcctgcgcgtccacggc
cgcgccgggcagccgtgcccggtgtgcggcgacaccatcgccgaggtctcgttcgccgac
tcggcgctgcagtactgcccgacctgccagaccggcggcaggaaactcgccgaccgtcgg
atgtcgcggctgctgaagtag
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