Stackebrandtia nassauensis: Snas_3226
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Entry
Snas_3226 CDS
T01194
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Snas_3226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sna03019
]
Snas_3226
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_3226
Enzymes [BR:
sna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Snas_3226
Messenger RNA biogenesis [BR:
sna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Snas_3226
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Snas_3226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
ADD42896
UniProt:
D3QBL4
LinkDB
All DBs
Position
3406000..3408075
Genome browser
AA seq
691 aa
AA seq
DB search
MNEVLDKAQTVLESLAGPEAVLRRDQATAIASLVTDRRRVLLVQRTGFGKSAVYFVATRL
LRDQGAGPTVIVSPLLALMRNQIAAAESAGINARTVNSANTHEWDEIFADVAADAVDVLL
VSPERLNNPDFRDLVLPKLAAAAGMLVVDEAHCISDWGHDFRPDYRRLKTFLAGLSPQVP
VLATTATANARVSADVAEQLGGDTLVLRGGLDRSSLRLSVVDVDDNARRLAWLDTWLHRL
DGSGIIYTLTVAAAHDIAEHLRGQGHDVAAYSGQTDTGERLRLEDDLLGNRVKALIATSA
LGMGFDKPDLGFVVHYGAPPSPVAYYQQVGRAGRARDRAEVVLLPGREDTRVWDYFASLA
FPAEDVVRKTLEVLAEADRPLSSAVLESRVDLSRNRLEMMLKVLDVDGAVKRVKGGWQHT
GRDWEYDRDRYERVAQTRRAEQRRMLDYAATTECRMAFLRTELDDADANACGRCDNCAGT
AFDEPLPVEALAAAEASLNRPGVATEPRRMWPPGMAAAGIDVAGKIPVDERAETGRVLAR
LSDIGWGGALRALFADSGDTAVDEAMFAAVVKVLAAWDWPKRPDTVVSMGSRSRPGLVDG
LARRIAEVGRMDYAGAMRRDAAAPSRTGASNSAQRLRQVWDTFQPPPVADGAVVLLVDDL
RDSGWSATVAARQLRLAGAAAVCPLALALDG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaggtgctggacaaggcgcaaacggtccttgagtcactggccgggcccgaggcg
gtactgcgacgcgatcaggccaccgcgatcgcgtcgctggtgaccgaccggcggcgggtg
ttgctggtgcagcgcaccggtttcgggaagtcggcggtgtacttcgtggcgacccggctg
ttgcgtgatcagggcgcgggcccgacggtgatcgtgtcgccgctgctggccctgatgcgc
aaccagatcgccgcggccgaaagcgcggggatcaacgcccgcaccgtgaactcggccaac
acgcacgagtgggacgagatcttcgccgatgtggccgccgacgccgtcgatgtgctgctg
gtcagccccgagcggctcaacaacccggattttcgggacctggtgttgccgaaactggcg
gcggccgcgggcatgctggtcgtggacgaggcgcactgtatctccgactggggtcacgac
tttcggcccgactatcgacggttgaagacgtttttggcgggtttgtcgccgcaggtgccg
gtgctggcgaccaccgccaccgccaacgcccgggtgtcggcagacgtggccgaacagctc
ggcggcgacacgctggtgttgcgcggcggcctggatcggtcctcgctgcggttgtcggtg
gtcgatgtcgacgacaacgcgcggcgcctggcgtggctggacacgtggctgcaccgactc
gacggcagcggcatcatctacaccctcaccgtggccgccgcccacgacatcgccgaacat
ttgcgcggccagggccatgacgtggccgcctacagtggccaaaccgacaccggggagcgg
ctgcgcctggaagacgacctgttgggcaaccgcgtcaaggcgctgatcgcgaccagtgcg
ctggggatgggtttcgacaaacccgacctgggtttcgtggtccactatggggcaccgccg
tcgccggtggcgtactaccagcaggtggggcgcgccgggcgtgcccgcgaccgcgccgag
gtcgtgttgctgccgggccgtgaggacacgcgcgtgtgggactatttcgcgtcgttggcg
tttccggccgaggacgtggtgcgaaagacccttgaggtgctggccgaggcggaccgtcca
ctgtccagtgccgtgttggagtcgcgggtcgacttgagccgcaaccgcctggagatgatg
ctcaaggtcctcgacgtcgacggcgccgtcaaacgcgtcaagggcggctggcagcacacc
ggccgcgactgggagtacgaccgggaccggtacgaacgcgtcgcccaaacgcgtcgcgcc
gaacagcgacgcatgctcgactacgcggccaccaccgaatgccggatggcgtttttgcgt
accgaactcgacgacgctgacgccaacgcgtgcggcagatgcgacaactgcgcgggcacc
gccttcgacgagccgctgccggtcgaggcgttggccgcggccgaggccagcctcaaccgg
cccggcgtggccaccgaaccccggcgcatgtggccgcccgggatggccgcggccggtatc
gacgtcgcgggcaagatccccgttgacgaacgcgccgagaccggccgagtcctggccagg
ctgtcggacatcggctggggcggcgcgctgcgcgccctgttcgccgacagcggcgacacg
gccgtggatgaggcgatgttcgcggcggtggtgaaagtgctggccgcgtgggattggccc
aaacgccccgacacggtcgtgtccatggggtcccgcagtcgcccgggtctggtcgacggt
ctggcgcggcgcatcgccgaagtggggcgcatggactacgccggggcgatgcgacgtgac
gcggccgcgccgtcgcgcaccggcgccagcaacagtgcccagcggctacggcaggtgtgg
gacaccttccaaccgccaccggtcgccgacggcgcggtggtgctgctggtcgacgacctg
cgcgactccgggtggagcgcgaccgtcgccgcccggcagctgcggctggccggagccgcc
gcggtgtgcccgctggcgttggcgctggacggctga
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