Stackebrandtia nassauensis: Snas_4448
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Entry
Snas_4448 CDS
T01194
Name
(GenBank) ribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Snas_4448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sna03019
]
Snas_4448
03016 Transfer RNA biogenesis [BR:
sna03016
]
Snas_4448
Enzymes [BR:
sna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Snas_4448
Messenger RNA biogenesis [BR:
sna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Snas_4448
Transfer RNA biogenesis [BR:
sna03016
]
Prokaryotic type
tRNA degradation factors
Snas_4448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
Motif
Other DBs
NCBI-ProteinID:
ADD44093
UniProt:
D3Q544
LinkDB
All DBs
Position
complement(4746315..4748168)
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AA seq
617 aa
AA seq
DB search
MTEPGDPVTHAHRGIMIDAPDTEDRDDAIWVRRDEAGYDVWVHIAPVSLQLPPGSPGDVE
ARRRIHTRYLPDRTIGMLPRDVERAATLTPGRVQPTVMVAMRFSPGGELFDTGVGHGLLR
EATAISYATASDILDDPTAGFHETLSHAHALATTLLRRRQNAGALALYDLFKGYATNEEG
QLVRLGDNQRHPGYIIVQELMIAANAAIARWCAERDLPILFRNHRQATVGGSREELAAEL
AATEARGDAAGYETLRDRLGFVQRPATYEPAVFGHYGLNLPAYAHTTSPLRRYPDLVNQR
ILLAAVDGAPSPYDHDSLDELGAELNQGIQAERERRAERHKQAARKVVRDQLDEAEFTAL
EPQQFSKVLHLALGHETPPPALATEAARRYRTGTLSLRDACEIVFRGRGDSWQPLRDQIN
HDLAAEPNKALTVVNMYAQAELGGPVGDANLIWDLTAVGSAHRPAFTARLRLELGPTRHT
SPRRTQLSKKDSKAQAALGLIAQLAGLDDLSHDIDTPEPSPARPSTREPVPADRNPVMAL
NEYAQTGVITELAWDYDSDGPPHQPTFTCTVTATGDTGEPLSATGTGAGKQAAKTSAAAR
LRKIVESGLDQPGMPAS
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcccggtgacccggtgacccacgctcaccggggcatcatgatcgacgcgccc
gacaccgaagaccgcgacgacgcgatctgggtgcgacgtgacgaggccggttacgacgtc
tgggtccacatcgcgccggtgtcgcttcagctgccgccgggcagccccggcgacgtcgag
gcccgccgccgcatccacacccgatacctgcccgaccgcaccatcggcatgctgccccgc
gacgtcgaacgcgccgccaccctcacccccggccgcgtccagccgaccgtcatggtcgcg
atgcgattcagccccggcggggaactgttcgacaccggcgtcggccacggcctgctgcgc
gaggccaccgccatcagctacgcgaccgcctcggacatcctcgacgaccccaccgccgga
ttccacgagacgctcagccacgcgcacgccctggccaccacgctgctgcgccgccgccag
aacgccggtgccctggccctgtacgacctgttcaagggttacgccaccaacgaggagggg
cagctggtccggttgggggacaaccaacgtcaccccggctacatcatcgtccaggagctc
atgatcgccgccaacgccgcgatcgcccgctggtgcgccgaacgcgacctgccgatcctg
ttccgcaaccaccggcaggcgacggtgggcggctcccgggaggaactggccgccgaactg
gccgccaccgaagcccgcggcgacgccgccggatacgagaccctgcgcgaccggctcggc
ttcgtgcagcgtcccgccacctacgaacccgccgtgttcgggcactatggactcaacctg
cccgcgtacgcccacaccaccagcccgctgcgccgctaccccgacctggtcaaccagcgc
atcctgctggccgccgtcgacggcgctcccagcccctacgaccacgacagcctcgacgaa
ctcggcgccgaactcaaccagggcatccaggccgaacgcgaacgccgcgccgaacgccac
aaacaggccgcccgcaaggtggtccgcgaccagctcgacgaggccgagttcaccgcgctg
gagccgcagcagttcagcaaggtcctgcacctggccctcggccacgagaccccgccgccc
gcactggccaccgaggccgcgcgccgctaccgcaccggaacactgtcgctgcgcgacgcc
tgcgagatcgtgttccgcggccggggcgacagctggcagccgctgcgcgaccagatcaac
cacgacctggccgccgaacccaacaaggccctcaccgtcgtcaacatgtacgcccaggcg
gaactgggcggcccggtcggcgacgccaacctgatctgggacctgaccgcggtcggctcg
gcgcaccgccccgccttcaccgcccggctgcggctcgaactcggtcccacccggcacacc
tcgccccgtcgcacccaactgtccaaaaaagactccaaggcgcaggcagcgctgggcctc
atcgcccagctggccggactcgacgacctgtcccacgacatcgacacccccgaaccgtcg
cccgcgcgacccagcacccgcgaacccgtgcccgccgaccgcaaccccgtcatggccctc
aacgaatacgcccagaccggcgtcatcaccgaactggcctgggactacgacagcgacggc
ccaccacaccaacccaccttcacctgcaccgtcaccgccaccggcgacaccggcgaaccc
ttgagcgccaccggaacaggcgccggaaaacaagccgccaagacctccgccgccgcccgg
ctgcgcaagatcgtcgaatccggactcgaccagccgggtatgcccgcgtcatga
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