Streptomonospora nanhaiensis: OUQ99_26065
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Entry
OUQ99_26065 CDS
T08686
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snah
Streptomonospora nanhaiensis
Pathway
snah03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OUQ99_26065 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snah03400
]
OUQ99_26065 (ligD)
Enzymes [BR:
snah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OUQ99_26065 (ligD)
DNA repair and recombination proteins [BR:
snah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OUQ99_26065 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WAE72621
LinkDB
All DBs
Position
complement(6047587..6048480)
Genome browser
AA seq
297 aa
AA seq
DB search
MAEHGGAVRVRAGRRVVEVRKPDKPLFGEGGPTKEDLARYHERIAPLMLPQLKGRPIALD
RYPDGVGAGGFFVKHPSTPEWVRTVETSGGTMMECRDAATLVWCADQAAITLHAWQSREP
DLGLPDRMVLDLDPAGDGEEAFAECRAAARDVREALDEVGLAAYVMTTGSRGLHVRSPLR
PEADDQEVRRLAEGVADRVAARRPDELTTEVRKEARKGRLFVDFLRNGREQLAVAPYSVR
ARPGAPVAAPVTWEELDGLESSRAFGTDLEREACPFAGMGRHARSPRRALERLERLG
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacacgggggcgcggtccgggtgcgcgcgggccgacgcgtcgtggaggtgcgc
aagccggacaaaccgctgttcggcgagggcgggccgaccaaggaggacctggcccggtac
cacgagcggatcgcaccgctgatgctgccgcagctgaagggccgcccgatcgccctggac
cggtaccccgacggggtcggtgccggcgggttcttcgtgaagcacccctccacaccggag
tgggtgcggaccgtggagaccagcggcggcacgatgatggagtgccgggacgcggcgacc
ctggtgtggtgcgccgaccaggcggcgatcaccctgcacgcctggcagtcgcgggaaccg
gacctcggcctccccgaccggatggtgctcgacctcgacccggcgggggacggggaggag
gccttcgcggagtgcagggccgccgccagggacgtgcgcgaggcgctggacgaggtgggg
ctggccgcgtacgtgatgacgaccggttcgcgcggtctgcacgtgcggtcgccgctgcgg
cccgaggccgacgaccaggaggtgcggcggctggcggagggcgtcgccgaccgcgtggcg
gcgcggagaccggacgagctgaccaccgaggtgcgaaaggaggcccggaaggggaggctg
ttcgtggacttcctgcgcaacggccgcgagcagctcgcggtcgccccgtactcggtacgg
gccaggcccggcgccccggtggcggccccggtgacctgggaggagctggacggcctggag
tcgtcgcgggcgttcggcacggacctggagcgcgaggcgtgcccgttcgcgggcatgggg
cgccacgcccggtcgccgcgcagggcactggagcggttggagcggctcggctga
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