Spongiibacter nanhainus: I6N98_01265
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Entry
I6N98_01265 CDS
T07977
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
snan
Spongiibacter nanhainus
Brite
KEGG Orthology (KO) [BR:
snan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snan03016
]
I6N98_01265
Enzymes [BR:
snan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I6N98_01265
Transfer RNA biogenesis [BR:
snan03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
I6N98_01265
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
QQD18534
UniProt:
A0A7T4R162
LinkDB
All DBs
Position
complement(259789..261732)
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AA seq
647 aa
AA seq
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MLDQDSLSQLKQLKTNIIESKDRGEGEVRGSQRRFGFVKLDDGRDVFLAPDEMQRVFPGD
RVRINVITDDKGKFKAELEKLIDSPLGIFTGRYVIRGQGHFVEPDLPRFNKLLFIPPSQR
KKAKPGDLLQVKVTRHPFRDGKSQVNIIDNIGQPDEAGIEGRYTISKFELPRQWPNDDIP
EQDSRAEAREDLRDLPLVTIDSADTRDVDDALWAAPEGDGWQLVIAVADPGAYIAPGSPL
DLAARARANTVYLPGCAQPMLPEAITQDRCSLLPDVDRAAIVCRLKVSAEGEISDIQFSE
ALIRSHAKLSYQQVQQHLDGSDTLDHDALGHLKAAADALKAYRRQHYLIMPEQPDFRYEL
DDNKRICAIARVDRNDAHRLVEECMLAANRAAAQWLGDSPALYNSHPGLREDRYDSVNKV
IASELPALAGTDITSLEGYQALIKAAETTDSTLPLQSIFARMLRPGELSTSPKPHFGLGL
ERYSTFTSPLRKYSDLLVQRCIRAKLQGEQPALPDDETIAALQEQLRHSRQASRQLEQWL
QYQYLAGQDKDAVYQGRIAHMNGGGFTVELNDTGISGFVEARSIPEKLSFDADTLRLFNA
EKNYQLEQAVNVKVAEIDPFQRRLIFTLLEPEQAPMETETEKAQGES
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccaggactccctttctcaactcaagcagttgaaaaccaacattattgaaagc
aaagaccggggcgagggcgaagtgcgcggcagccagcgacgcttcggcttcgttaagctg
gacgacggccgtgacgtctttctggccccggatgagatgcagcgggtgttccccggcgac
cgagtacgcatcaacgtcatcactgacgacaagggcaagttcaaagccgagctggaaaaa
ctgatcgacagcccgctgggcatctttaccggccgctatgtgatcagggggcagggccat
tttgtagagccggatctgccccggttcaacaaactgctgtttatccccccttcacagcgt
aaaaaggccaagcccggcgacctgctccaggtcaaggtcacccgccacccctttcgggac
ggcaagtcccaagtcaatatcatcgacaatattggtcagcccgacgaggccggcattgag
gggcgctataccatcagcaagtttgaattacctcgacagtggcccaatgacgacataccc
gagcaggatagccgcgccgaagcccgggaagatctgcgggatctgccactggttaccatc
gactccgccgatacccgggacgtggacgacgccctgtgggcggcccccgaaggcgacggc
tggcagctggtgatcgcggttgccgaccccggtgcctacattgccccaggcagccccctg
gatctggctgccagagcccgcgccaataccgtttacctgcccggctgcgcccagcccatg
ctgcccgaggccatcacccaggaccgctgctcactgctgcccgacgtcgatcgggccgcc
attgtctgccgattaaaggtgagcgccgagggcgaaatcagcgacattcagtttagtgaa
gcgctgatccgctcccacgccaaacttagctaccaacaggtccaacagcacctggacggc
agcgacaccctggaccacgacgcgctgggccatctcaaggcggcagccgatgctctcaag
gcttaccgacgccagcactacctgatcatgcccgagcaaccggacttccgctacgagctg
gacgacaataagcgcatctgcgcgattgcacgggtcgatcgcaacgacgctcaccgcctg
gtggaggagtgtatgctggccgccaaccgcgccgcggcccagtggctgggggacagcccg
gctctgtacaacagccaccccggcctgcgggaagaccgctacgacagcgtcaacaaggtt
atcgccagcgagctgcccgcgttggcaggcactgacatcacatcactcgagggttaccag
gcgctgatcaaggccgccgaaaccaccgattctacgctgcctctgcagagcatttttgcc
cgcatgctgcgccccggagagctcagcacctcgcccaagcctcactttggcctgggcttg
gagcgctactccacctttacgtcgccgctgcgcaaatacagcgacctgctagtacagcgc
tgcatccgcgccaaacttcagggcgagcagcccgcgctacccgacgacgagaccattgcc
gcactgcaagaacagctgcgccacagccgtcaggccagccgccagctggagcagtggctg
cagtatcagtacttggctgggcaggataaagatgccgtctaccagggacgcatagcccac
atgaatggcggcggctttaccgtggagctcaacgacaccggcatcagtggttttgtggaa
gcccgctccatccccgaaaaacttagcttcgacgcggacaccctgcgactgttcaacgcg
gagaaaaattaccagctggagcaagcggtaaacgtgaaggtcgcggagatcgatcccttc
cagcgccgcctgatcttcactctgctggagcccgagcaggcgccgatggagactgagaca
gagaaggcgcaaggcgagagctag
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