Spongiibacter nanhainus: I6N98_03040
Help
Entry
I6N98_03040 CDS
T07977
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
snan
Spongiibacter nanhainus
Pathway
snan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6N98_03040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snan03019
]
I6N98_03040
Enzymes [BR:
snan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6N98_03040
Messenger RNA biogenesis [BR:
snan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6N98_03040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
CMS1
HI1480
DUF829
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QQD18857
UniProt:
A0A7T4R215
LinkDB
All DBs
Position
complement(679462..680763)
Genome browser
AA seq
433 aa
AA seq
DB search
MSFESLGLSAPILKAVAESGYDTPSPIQAEAIPAVMRRRDVMAAAQTGTGKTAAFTLPLL
EQLSSEKPAPAKQCKVLILTPTRELAAQIKDNIAHYSKYLSVRTAVVFGGVKINPQITTL
GRGCEILVATPGRLLDLHQQGAVKFDALQTLVLDEADRMLDMGFIHDIRRIVRVLPERRQ
TLMFSATFSAEIRKLAKTLVQDPIEVSVAPPNSTAEKVEQWICPVDKKRKPALLAHLINE
NGWHQVLVFSRTKHGANKLSRFLDEAGIPSAPIHGNKSQNARLRALADFKAGKIQALVAT
DIAARGIDISHLPHVVNVDLPNVAEDYVHRIGRTARAGASGSAVSLVSADEVDQLRDIER
LIRQNLRREIVEGFDPQHALPESGSPVRRPSQGKPQRRRPTGNNNGNRAPGSGDRQPARR
RRRPSNQRKANAG
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatccctgggcctgtcggcccctatccttaaggccgtggccgaaagcggc
tatgacaccccatctcctatccaggccgaagccatccccgcagtgatgcgccggcgggac
gtgatggccgccgcccaaaccggcactggcaaaaccgcagcctttactctgcccctgctg
gagcagctaagcagcgaaaaaccggcacccgccaagcaatgcaaagtgctgatcctgacc
ccaacccgtgagctggccgcacagatcaaggacaacatcgcccactacagcaaatacctg
tcggtgcgcaccgcggtggtatttggcggcgttaaaatcaatccccagatcaccaccctg
ggccggggctgcgaaatcctggtggccacccccggtcgtctgctggacctgcatcaacag
ggcgcggtgaaattcgatgctttgcagaccctggtgctggacgaagccgaccgcatgctg
gatatgggctttattcacgacatacgccgcattgtccgggtgctgccagagcgtcggcag
acgctgatgttctccgccaccttctccgccgagatccgcaaattggccaagaccctggtg
caagacccaattgaagtttcggtggcgccgcccaactctaccgccgaaaaagtcgaacag
tggatctgcccggtagacaagaaacgcaagcccgctctgctggcccatctgatcaatgaa
aacggctggcatcaggtgctggtgttttcccgcaccaagcacggcgccaacaagctgagt
cgttttttggacgaggccggcatcccctcggcgccaatccacggcaacaaaagtcagaac
gcccgtctgcgggccctggcggattttaaagccggcaaaatacaggcgctggtggccact
gatatcgctgcccggggcatcgacattagccacctaccccatgttgtcaatgtggacctg
cccaatgtggcggaggattacgtacaccgcatcggtcgcaccgcgcgagccggtgccagc
ggctcggcggtgtctctggtcagtgccgatgaagtcgatcagctgcgggatattgagcgt
ctgattcgccaaaacctccgccgtgagattgtggagggattcgatccccagcacgccctg
cccgaatccggctcaccggtgcgcagaccgtcccagggtaagcctcagcgtcgacgcccg
accgggaacaacaatggcaaccgcgctcccggttcaggggatcgccaaccggcacgccgc
cggcgccgcccgtccaatcagcgcaaagccaacgccggctaa
DBGET
integrated database retrieval system
