Spongiibacter nanhainus: I6N98_14405
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Entry
I6N98_14405 CDS
T07977
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
snan
Spongiibacter nanhainus
Pathway
snan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6N98_14405 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snan03021
]
I6N98_14405 (rpoB)
03400 DNA repair and recombination proteins [BR:
snan03400
]
I6N98_14405 (rpoB)
Enzymes [BR:
snan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6N98_14405 (rpoB)
Transcription machinery [BR:
snan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6N98_14405 (rpoB)
DNA repair and recombination proteins [BR:
snan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6N98_14405 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DUF5871
Motif
Other DBs
NCBI-ProteinID:
QQD17542
UniProt:
A0A7T4UPG1
LinkDB
All DBs
Position
complement(3142058..3146134)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPHVMDVPYLLAIQLDSYTKFTQQGIPSKDRGDHGLHAAFKSI
FPIVSYSGNAALEYVDYVLGAPAFDVNECQLRGVTYSVPLRVKVRLIIYDKESANKSIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGMTSEEILDIFFDVNTFKVTKDG
SFSIELIPERLRGEVATFDICGADGKVIAETGRRITARHIRQIEKANLTELEVPPEYLIG
RSLAKDIVDTKTGEVLFACNTEITAEMLEAFQQAGINEIETLYTNELDCGPFISETLRSD
PSSTELEALVEIYRMMRPGEPPTKESAENLFQNLFFSAERYDLSAVGRMKFNRRLGREEI
TGPGTLDKDDIVAVLKTLVDIRNGKGIVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA
VKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLESPYRKV
IDGQVTDEIEFLSAINEAEQVIAQASAAVNDKGELTDEMVAVRHMNEFTVMPPEKVTYMD
VSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGFERYVASDSGV
CVVARRGGVIDSVDSSRIVVRVDADQVAPGQPPVDIYNLTKYTRSNQNTCINQRPIVGEG
DAVTAGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERIVQEDRFTTIHIQ
ELTCIARDTKLGPEEISADIPNVGEGALSNLDESGIVYIGAEVGPGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDKRALEIEKMQLD
EFRKDLNEEYRIIEEATFVRLRSLLQGQKILSGPGLKKNDELTSELLDNLKKDDWFKLRL
SDESINAALEDADKQLAAHQKDLEERFEDKKRKLTTGDDLAPGVLKIVKVYLAIKRRIQP
GDKMAGRHGNKGVISVIMPIEDMPFDEKGEPVDIVLNPLGVPSRMNVGQILETHLGLAAK
GLGGKIDEMLKQQKAVADIRKFLAEIYNDGAGRIEELDSFSDQEVLDLAKNLTGGVPMAT
QVFDGANESEIKKLLKLADLPESGQLALYDGRTGMEFDRPVTVGYMYMLKLNHLVDDKMH
ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM
YKNIVDGDQRMEPGMPESFNVLVKEIRSLGINIELDTE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgtaaggattttggcaaattgcctcac
gtcatggacgtgccttatctcctagcgattcagctggattcctataccaaatttacgcag
cagggcattccgtcgaaggatcgcggcgaccacggcctgcacgcggcttttaaatctata
ttccccatcgtgagctactccggcaatgcggcgctggagtatgttgactacgtgctgggc
gcaccggcgtttgacgtcaacgaatgccagctgcggggcgtcacttactcagttccgctg
cgggtgaaagtacggctgattatctatgataaagagtcagccaataagagcatcaaagat
atcaaagagcaggaagtctacatgggggaaatccccctgatgactgaaaacggtaccttc
gttatcaacggtaccgagcgtgttatcgtctcccagctgcaccgcagccccggcgtgttc
ttcgatcacgatcgcggtaagactcactcctcgggcaagttgctctattcagcccgggtt
attccttaccgtggttcttggttggattttgagttcgatcccaaagacctggtctatgtg
cgtatcgaccgccgtcgtaagttgccggcgacaattttgctgcgtgccctgggcatgacc
tctgaagaaatcctggacatcttctttgacgtcaacacctttaaggtcactaaggacggc
agcttctccattgagctgatcccagaacgcctccggggtgaggtggcaaccttcgatatt
tgcggcgctgacggcaaagtcatagctgagaccggccgccggatcacggctcgccatatc
cgccaaattgaaaaggccaacctgactgagctggaagtgccgcccgagtatctgattggc
cgttcgctggccaaagatatcgtcgacaccaagaccggcgaagtcctgtttgcctgtaac
accgagattaccgctgaaatgttggaagccttccagcaggccggtattaacgaaatcgaa
acgctgtacaccaacgaactggattgcggcccgtttatcagcgaaaccctgcgcagcgac
ccgtccagcactgagctggaagccttggtcgaaatttaccgcatgatgcgccccggtgag
ccgccgactaaagaatccgcggaaaacctgttccagaacctgttcttctcggcagagcgt
tacgacctgtcagcggttggtcgtatgaagttcaaccgtcgtttgggccgcgaagagatt
accggtcccggcacgctggataaagacgatatcgttgccgtgctgaagactctggtagat
atccgtaacggtaaaggcattgtcgacgatatagaccacttgggtaaccgtcgcattcgc
tccgtgggcgaaatggctgaaaaccagttccgcgtgggtctggtgcgggttgagcgggcg
gtaaaagagcgcttgtccatggcggagagcgaaggcctgatgccccaggacttgatcaac
gccaagcctgttgctgctgcggtgaaggagttctttggttcttcccagctgtctcagttt
atggaccagaacaacccattgtcggaaatcacccacaagcgtcgtgtatcggcattgggg
ccgggtggtctgactcgggagcgtgccggcttcgaggtgcgggacgtacacccgactcac
tacggtcgcgtctgtcctatcgagacacctgaagggccgaacatcggtctgatcaactct
ctggcgacctatgctcgtaccaatgagtacggcttcctggagagcccctaccgcaaagtt
atcgacggccaggttactgacgaaatcgagttcctgtctgccattaacgaagcagagcaa
gtcattgcacaggcttcggcagcggtgaatgacaagggcgagctgaccgacgaaatggtc
gccgtgcggcacatgaacgaatttaccgttatgccgccagaaaaagtcacctatatggat
gtctcgcccaagcaggtggtttcggtggccgcgtcactgatccccttcctggagcacgat
gatgcgaaccgggcactgatgggttcaaacatgcagcgtcaggcagtgccaacgctacgc
gccgataagcctctggtcggtaccggttttgagcgctatgttgcctctgactccggggtt
tgtgttgtggctcgccgcggtggtgtcatcgacagcgtggactcgtcccgcatcgttgtc
cgggtcgacgccgatcaggttgcccctggccaaccgcccgtggatatttacaacctgacc
aagtacacccgttcaaaccagaacacttgcatcaatcagcggcccattgtcggtgaaggt
gatgcggtaacggctggcgatattctggctgatggcccgtcagtggatctgggcgagttg
gcgctgggtcagaacatgcgcatcgcctttatgccctggaacggttacaacttcgaggac
tccatcctggtgtccgagcggattgttcaagaagatcgttttaccacgatccacatccag
gagctgacctgtattgctcgggacaccaagctcgggcccgaagaaatttctgcggatatt
cccaatgtcggcgagggcgcgctctccaacctggatgagtccggtatcgtctacattggc
gctgaagtgggtcccggcgacattctggtgggcaaggtgacgccgaaaggtgaaacccag
ctgacgccagaagaaaaactgctgcgtgcgattttcggtgaaaaggcatctgacgtaaaa
gatacttctctgcgagtgccctccagcaccaagggtacggttatcgacgtgcaggtcttt
acccgggatggtctcgagaaagacaagcgcgcgctggaaatcgaaaagatgcagctcgat
gagttccgcaaggacctcaacgaggagtaccgcatcatcgaagaggccacgtttgttcgc
ctgcgcagtctgctccaaggtcaaaagatcctcagcggtcccggcctgaaaaagaacgac
gagctgacttcagagctgctggacaacttgaagaaagacgactggttcaagctgcgtctt
tctgacgagtctattaacgcggcgctggaagatgctgacaagcagcttgccgctcaccag
aaagacctggaagagcgctttgaagacaagaagcgcaagctgaccactggcgacgacctt
gcgcccggcgtgctgaaaatcgttaaggtttacctggcgatcaagcgccgtatccagccc
ggtgacaaaatggcaggccgccacggtaacaagggtgttatctcggtcatcatgcccatc
gaggatatgccctttgatgagaagggtgagcccgtggacatcgtgctcaacccactgggt
gtgccgtcgcggatgaacgtcggtcagattctggaaacccaccttggcctggcggcgaag
gggctgggtggaaagatcgacgagatgcttaagcaacagaaggccgttgccgatattcgc
aagttcctggcggaaatctacaacgacggcgccggtcgcattgaagagctggacagcttc
tcggatcaagaggtgctcgacctggccaagaacctgacaggcggcgtaccgatggccact
caagtctttgacggtgccaacgaaagcgagatcaaaaaactactcaaactggctgatttg
ccagagagtggtcagctcgccctgtatgacggccgtaccggtatggaatttgatcgcccg
gtcactgttggttacatgtacatgctcaagctgaaccacctggtggacgacaagatgcac
gcccgttccaccggttcctacagcctggttactcagcagccgctgggtggtaaggcgcag
tttggtggtcagcgcttcggtgagatggaagtatgggcgctggaggcctacggtgccgcc
tacaccctgcaggaaatgctcaccgttaagtcggacgacgtcaacggtcggaccaagatg
tacaagaacattgttgatggcgaccagcgtatggagccgggcatgcccgagtccttcaac
gtactggttaaagagatccgctccctcggtatcaatatcgagctggacacggaataa
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