Spongiibacter nanhainus: I6N98_15005
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Entry
I6N98_15005 CDS
T07977
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
snan
Spongiibacter nanhainus
Pathway
snan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6N98_15005 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snan03019
]
I6N98_15005 (rhlB)
Enzymes [BR:
snan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6N98_15005 (rhlB)
Messenger RNA biogenesis [BR:
snan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6N98_15005 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QQD20203
UniProt:
A0A7T4R4C5
LinkDB
All DBs
Position
complement(3266532..3267965)
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AA seq
477 aa
AA seq
DB search
MFNSKEESQDNTQQRASSGKSPAETQAAGPASQNKRADNNSGASAKDNESNRGNGGGRSG
RQRRTKNTKKNGTAMDQHANWSLDQFQVPEEAGKTRFHDLGLDERLMHGIADAGFQYCSP
IQAASLPHTLRGNDVIGKAQTGTGKTAAFLVTIFNDLLSNPVEEERFAGEPRALVIAPTR
ELVVQIGDDAKQLGKYCGLNVSTLIGGMDYQKQLERLNSGLVDIVVATPGRLLDFTGRRD
LYLDQVEVLVIDEADRMLDMGFIPQVKRIVRQTPRKTHRQTLLFSATFTEDIIRLTDQWT
YEPVRIEIEPEHVATDSVDQKVYLIESQDKFRCLLNIVRQPDAQSVIIFANRRDEVRRLH
ERLRKAGVSCGILSGEIPQNKRSRTLQDFKDSRIQCLVATDVAGRGIHVDGISHVVNYTL
PEDPDDYVHRIGRTGRAGATGTSISFACEDDAFLLPAIETELGMKLPCEQPPADLLS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
ctgtttaattccaaagaagagtcccaagacaacactcaacaacgtgcctcatcaggcaag
tcgccggcggaaacccaggctgccggccccgcgtcccagaataagcgcgccgacaataac
agcggtgcgtctgccaaagacaatgaatcgaatcgcggcaacggtgggggccgcagtggc
cgccagcgccgcactaaaaacaccaaaaagaacggtaccgcaatggatcagcatgccaac
tggagtttggaccagtttcaagtaccagaggaagccggcaaaacccgctttcacgatctc
ggcctcgatgagcgcctaatgcacggcattgccgacgccggttttcaatactgctcgccc
attcaggcggcgtccttgccccacacccttcgcggcaacgatgttatcggtaaagcgcaa
accggtaccggtaaaaccgccgccttcctggtcaccatttttaacgatctgttaagcaat
ccggttgaagaggagcgctttgccggcgagcctcgagcactggttattgctcccacccgt
gagctggtcgtgcagataggcgatgacgccaaacaattgggcaagtactgtggcctcaat
gtctcgaccctgattggcggcatggattaccaaaagcagcttgagcgcctcaacagcggt
ttggtggatatcgtggtggccacgccgggacgcctgctggactttaccggccgccgggat
ctctatctggatcaggttgaggtgctggtcattgacgaagccgaccgcatgctggatatg
ggctttattccccaggtgaagcgcatcgtgcggcaaacgccccgaaaaacccaccgccag
actctgctgtttagtgccaccttcacggaagatattatccgccttactgatcagtggacc
tacgagccagtgcggattgaaatcgagcccgagcatgtggccacagactcggtggatcag
aaggtgtacctgatcgagtcccaggataaattccgctgcttgctcaatattgtccgccag
ccggatgctcagagcgtgattatttttgccaaccgccgggatgaagtgcggcgcctccac
gagcgcttgcgcaaggccggggtgagctgcggcattttgtcgggggagattccccagaac
aaacgctcccgtacccttcaggattttaaagacagtcgcatccagtgcctggtggccacc
gatgtagcggggcgggggattcacgtcgatggcatcagccacgtcgtgaactacaccctg
cccgaagaccccgatgactacgttcaccgcatcggccgtaccgggcgcgccggtgccacc
ggcacctccatcagcttcgcctgcgaggatgatgcctttttgctgccggccattgaaacc
gaattgggcatgaaactgccctgcgaacagccgcccgccgatttgttgtcatag
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