KEGG   Sphingomonas naphthae: PQ455_01220
Entry
PQ455_01220       CDS       T08850                                 
Name
(GenBank) CDC48 family AAA ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
snap  Sphingomonas naphthae
Brite
KEGG Orthology (KO) [BR:snap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    PQ455_01220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:snap03019]
    PQ455_01220
   03009 Ribosome biogenesis [BR:snap03009]
    PQ455_01220
   04131 Membrane trafficking [BR:snap04131]
    PQ455_01220
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:snap04147]
    PQ455_01220
Messenger RNA biogenesis [BR:snap03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     PQ455_01220
Ribosome biogenesis [BR:snap03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    PQ455_01220
Membrane trafficking [BR:snap04131]
 SNARE
  SNARE associated proteins
   Others
    PQ455_01220
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    PQ455_01220
Exosome [BR:snap04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   PQ455_01220
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N AAA_16 RuvB_N AAA_22 AAA_5 AAA_33 AAA_2 CDC48_2 AAA_14 IstB_IS21 TIP49 nSTAND3 AAA_28 RNA_helicase ATPase_2 AAA_24 AAA_18 DUF815 NPHP3_N AAA_17 Mg_chelatase AAA_7 ABC_tran AAA_19 AAA_lid_PRS2_C AAA_30 AAA_3 Parvo_NS1 Sigma54_activat TsaE AAA_25 Zeta_toxin AAA_11 Vps4_C NB-ARC PhoH bpMoxR SLFN-g3_helicase
Other DBs
NCBI-ProteinID: WCT73882
UniProt: A0ABY7TKX8
LinkDB
Position
complement(247025..249325)
AA seq 766 aa
MADGEVTTRRLQVANARPDDSGRGLARLSRSTMNALGLSEGDVVEIEGKRATPARAVLPY
PEDEGLDILRLDGLQRANAGVGSGDFVEVRRAVSVAAQRVVFAPAQENLRLQGSGAALKR
TFGMRPLTAGDVVATAGQQRVEQGNIPPQLRQMLNAPAYALQEIRLTVVSTVPAKGIVHI
DADTEVELRAEYVAATGERRADVTYDDIGGLGTTIDQVREMVELPLRYPELFQRLGVDPP
KGVLLYGPPGTGKTRLARAVANESHASFFSIAGPEIMGSAYGESEKRLREVFEEAAKAAP
SIIFIDEIDSIAPKRGQATGEAEKRLVAQLLTLMDGLEARQNTVIIAATNRPEAIDEALR
RPGRFDREIVIGVPDERGRREILGIHTRGMPLGDKVDLAELSRTTYGFVGADLAALAREA
AIEAVRRIMPRLNLEDKTVPQEVLDDLSVTREDFIEALKRVQPSAMREVMVQQPTVRWDD
VGGLDAARDRLKEGVELPLKRPESFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAEAN
FIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGMGEPQVTER
VVNTILAEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELVYVSVPDEAGRRRILGI
HTEKMPLAADVDLDRLADRTERFTGADLEDLVRRAGMFALRGSLDVTEVTMAHFEHALDE
TRASVTPEMEQEYERIAAHLKQDALALQPIGFTPIGTLGEGESKRR
NT seq 2301 nt   +upstreamnt  +downstreamnt
atggccgacggtgaggtgacgacgcgcaggttgcaggtggcgaatgcccggcccgatgat
tcggggcgaggactggcccgcctgtcgcgatcgacgatgaacgcgctcggcctgtccgaa
ggcgacgtggttgagatcgagggcaagcgcgccacgccggcccgcgcggtgctgccctac
cccgaggacgaggggctcgacatcctgcggctcgacgggctccagcgcgccaacgccggg
gtcggatcgggcgatttcgtcgaggtgcggcgcgcggtttcggtcgcggcccagcgggtc
gtgttcgcacctgcacaagaaaatctgcggctccagggatcgggcgcggcgctgaagcgc
accttcggcatgcgccccctgaccgccggcgacgtggtcgcgacggcaggccagcaaagg
gtggagcagggcaatatcccgccccaactgcgccagatgctgaacgcgccggcctatgcc
ttgcaggaaatccgcctcaccgtggtctcgaccgtgccggccaagggcatcgtgcatatc
gacgccgataccgaggtggaattgcgcgccgaatatgtcgccgccaccggcgagcggcgt
gcggacgtgacctatgacgatatcggcgggctcggcacgacgatcgatcaggtgcgcgag
atggtcgagctgccgctgcgctacccggagctgttccagcggctgggcgtcgatccgccc
aagggcgtgctgctctatggcccgcccggcaccggcaagacgcgcctggcccgcgccgtc
gccaacgaaagccacgccagcttcttctcgatcgccggcccggagatcatgggatcggcc
tatggcgagagcgagaagcggctgcgcgaagtgttcgaggaggccgccaaggccgcgccc
tcgatcatcttcatcgacgagatcgattcgatcgcccccaagcgcgggcaggcgaccggc
gaggcggagaagcgcctcgtcgcgcagctgctgaccttgatggatgggctggaggcgcgg
cagaacaccgtcatcatcgccgccaccaaccggccggaggcgatcgacgaggcgctgcgc
cggccgggccggttcgatcgcgagatcgtgatcggcgtgcccgacgagcgcgggcggcgc
gagatcctgggcatccacacgcgcggcatgccgctgggcgacaaggtcgatctggcggag
ctgtcgcgcaccacctacgggttcgtcggggcggatctggcggcgctggcccgcgaggcc
gcgatcgaggcggtgcggcggatcatgccgcgcctgaacctggaggataagacagtgccg
caggaggtgctggacgatctttcggtgacgcgcgaggatttcatcgaggcgctgaaacgg
gtccagccgtccgccatgcgcgaggtgatggtgcagcagccgacggtgcgctgggacgat
gtcggcgggctcgacgcggcgcgcgaccggctgaaggaaggcgtggagctgccgctcaag
cggccggagagcttccgccggctcggcatccgcccggccaagggcttcctgctctacggc
ccgcccggcaccggcaagacgctgctcgccaaggcggtggcgcgtgaggcggaggcgaat
ttcatcgccaccaaatcgtccgatctgctgagcaaatggtatggcgagagcgagcagcag
atcgcccggctgttcgcgcgcgcccggcaggtcgcgcccacggtgatcttcatcgacgaa
ctcgattcgctggtgccggcgcgcggcggcgggatgggcgagccgcaggtgaccgagcgg
gtggtcaacaccatcctcgccgagatggacgggctggaggaattgcagtcggtcgtggtg
atcggcgccaccaaccggcctaatttgatcgatcccgcattgctgcggccggggcggttc
gacgagctggtctatgtttcggtgcccgacgaggccgggcggcggcgcatcctgggcatc
cataccgagaagatgccgctggcggcggatgtcgatctcgatcggctggcggatcgcacc
gagcggttcaccggcgccgatctggaggatctggtgcgccgcgccggcatgttcgcgctg
cgcggctcgctcgacgtgaccgaggtgacgatggcgcatttcgagcatgcgctggacgag
acgcgcgccagcgtcacgcccgagatggagcaggaatatgagcggatcgcggcgcatctg
aagcaggatgcgctggcgctccagccgatcggcttcaccccgatcggcacgctcggcgaa
ggagagagcaagcggcgctga

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