Sphingomonas naphthae: PQ455_01220
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Entry
PQ455_01220 CDS
T08850
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
snap
Sphingomonas naphthae
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PQ455_01220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snap03019
]
PQ455_01220
03009 Ribosome biogenesis [BR:
snap03009
]
PQ455_01220
04131 Membrane trafficking [BR:
snap04131
]
PQ455_01220
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snap04147
]
PQ455_01220
Messenger RNA biogenesis [BR:
snap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PQ455_01220
Ribosome biogenesis [BR:
snap03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PQ455_01220
Membrane trafficking [BR:
snap04131
]
SNARE
SNARE associated proteins
Others
PQ455_01220
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PQ455_01220
Exosome [BR:
snap04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PQ455_01220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
AAA_5
AAA_33
AAA_2
CDC48_2
AAA_14
IstB_IS21
TIP49
nSTAND3
AAA_28
RNA_helicase
ATPase_2
AAA_24
AAA_18
DUF815
NPHP3_N
AAA_17
Mg_chelatase
AAA_7
ABC_tran
AAA_19
AAA_lid_PRS2_C
AAA_30
AAA_3
Parvo_NS1
Sigma54_activat
TsaE
AAA_25
Zeta_toxin
AAA_11
Vps4_C
NB-ARC
PhoH
bpMoxR
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WCT73882
UniProt:
A0ABY7TKX8
LinkDB
All DBs
Position
complement(247025..249325)
Genome browser
AA seq
766 aa
AA seq
DB search
MADGEVTTRRLQVANARPDDSGRGLARLSRSTMNALGLSEGDVVEIEGKRATPARAVLPY
PEDEGLDILRLDGLQRANAGVGSGDFVEVRRAVSVAAQRVVFAPAQENLRLQGSGAALKR
TFGMRPLTAGDVVATAGQQRVEQGNIPPQLRQMLNAPAYALQEIRLTVVSTVPAKGIVHI
DADTEVELRAEYVAATGERRADVTYDDIGGLGTTIDQVREMVELPLRYPELFQRLGVDPP
KGVLLYGPPGTGKTRLARAVANESHASFFSIAGPEIMGSAYGESEKRLREVFEEAAKAAP
SIIFIDEIDSIAPKRGQATGEAEKRLVAQLLTLMDGLEARQNTVIIAATNRPEAIDEALR
RPGRFDREIVIGVPDERGRREILGIHTRGMPLGDKVDLAELSRTTYGFVGADLAALAREA
AIEAVRRIMPRLNLEDKTVPQEVLDDLSVTREDFIEALKRVQPSAMREVMVQQPTVRWDD
VGGLDAARDRLKEGVELPLKRPESFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAEAN
FIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGMGEPQVTER
VVNTILAEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELVYVSVPDEAGRRRILGI
HTEKMPLAADVDLDRLADRTERFTGADLEDLVRRAGMFALRGSLDVTEVTMAHFEHALDE
TRASVTPEMEQEYERIAAHLKQDALALQPIGFTPIGTLGEGESKRR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggtgaggtgacgacgcgcaggttgcaggtggcgaatgcccggcccgatgat
tcggggcgaggactggcccgcctgtcgcgatcgacgatgaacgcgctcggcctgtccgaa
ggcgacgtggttgagatcgagggcaagcgcgccacgccggcccgcgcggtgctgccctac
cccgaggacgaggggctcgacatcctgcggctcgacgggctccagcgcgccaacgccggg
gtcggatcgggcgatttcgtcgaggtgcggcgcgcggtttcggtcgcggcccagcgggtc
gtgttcgcacctgcacaagaaaatctgcggctccagggatcgggcgcggcgctgaagcgc
accttcggcatgcgccccctgaccgccggcgacgtggtcgcgacggcaggccagcaaagg
gtggagcagggcaatatcccgccccaactgcgccagatgctgaacgcgccggcctatgcc
ttgcaggaaatccgcctcaccgtggtctcgaccgtgccggccaagggcatcgtgcatatc
gacgccgataccgaggtggaattgcgcgccgaatatgtcgccgccaccggcgagcggcgt
gcggacgtgacctatgacgatatcggcgggctcggcacgacgatcgatcaggtgcgcgag
atggtcgagctgccgctgcgctacccggagctgttccagcggctgggcgtcgatccgccc
aagggcgtgctgctctatggcccgcccggcaccggcaagacgcgcctggcccgcgccgtc
gccaacgaaagccacgccagcttcttctcgatcgccggcccggagatcatgggatcggcc
tatggcgagagcgagaagcggctgcgcgaagtgttcgaggaggccgccaaggccgcgccc
tcgatcatcttcatcgacgagatcgattcgatcgcccccaagcgcgggcaggcgaccggc
gaggcggagaagcgcctcgtcgcgcagctgctgaccttgatggatgggctggaggcgcgg
cagaacaccgtcatcatcgccgccaccaaccggccggaggcgatcgacgaggcgctgcgc
cggccgggccggttcgatcgcgagatcgtgatcggcgtgcccgacgagcgcgggcggcgc
gagatcctgggcatccacacgcgcggcatgccgctgggcgacaaggtcgatctggcggag
ctgtcgcgcaccacctacgggttcgtcggggcggatctggcggcgctggcccgcgaggcc
gcgatcgaggcggtgcggcggatcatgccgcgcctgaacctggaggataagacagtgccg
caggaggtgctggacgatctttcggtgacgcgcgaggatttcatcgaggcgctgaaacgg
gtccagccgtccgccatgcgcgaggtgatggtgcagcagccgacggtgcgctgggacgat
gtcggcgggctcgacgcggcgcgcgaccggctgaaggaaggcgtggagctgccgctcaag
cggccggagagcttccgccggctcggcatccgcccggccaagggcttcctgctctacggc
ccgcccggcaccggcaagacgctgctcgccaaggcggtggcgcgtgaggcggaggcgaat
ttcatcgccaccaaatcgtccgatctgctgagcaaatggtatggcgagagcgagcagcag
atcgcccggctgttcgcgcgcgcccggcaggtcgcgcccacggtgatcttcatcgacgaa
ctcgattcgctggtgccggcgcgcggcggcgggatgggcgagccgcaggtgaccgagcgg
gtggtcaacaccatcctcgccgagatggacgggctggaggaattgcagtcggtcgtggtg
atcggcgccaccaaccggcctaatttgatcgatcccgcattgctgcggccggggcggttc
gacgagctggtctatgtttcggtgcccgacgaggccgggcggcggcgcatcctgggcatc
cataccgagaagatgccgctggcggcggatgtcgatctcgatcggctggcggatcgcacc
gagcggttcaccggcgccgatctggaggatctggtgcgccgcgccggcatgttcgcgctg
cgcggctcgctcgacgtgaccgaggtgacgatggcgcatttcgagcatgcgctggacgag
acgcgcgccagcgtcacgcccgagatggagcaggaatatgagcggatcgcggcgcatctg
aagcaggatgcgctggcgctccagccgatcggcttcaccccgatcggcacgctcggcgaa
ggagagagcaagcggcgctga
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