Sphingomonas naphthae: PQ455_03005
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Entry
PQ455_03005 CDS
T08850
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
snap
Sphingomonas naphthae
Pathway
snap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PQ455_03005 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snap03021
]
PQ455_03005 (rpoC)
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_03005 (rpoC)
Enzymes [BR:
snap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PQ455_03005 (rpoC)
Transcription machinery [BR:
snap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PQ455_03005 (rpoC)
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PQ455_03005 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
WCT74215
UniProt:
A0ABY7TP94
LinkDB
All DBs
Position
637818..642098
Genome browser
AA seq
1426 aa
AA seq
DB search
MNEMTNFANPLAAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMQLKQLERVLYFEAYIVIEPGLTPLEKYQLLTEDELLDAQDQYGEDAFSA
GIGAEAVRIMLESLDLEGEKVQLLEELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMI
LEVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMMKENEPGEGMLISDMAEVHQALN
AGAVTLHTKIISRVPQTDEDGKRYMKRIETTPGRMLLGETLPQSHKVPFETVNRLLTKKE
IGDVIDVVYRHTGQKETVLFADGIMALGFRHAFQAGISFGKDDMIIPDSKVPLVDETKAL
VKDFEQQYQDGLITQQEKYNKVIDAWSRCGDRVAGEMMKEIQAVKKDPETGREKPINAIY
MMAHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVSQDCVVVEIDCGTERALEMKAIVQGGATIASLGERILGRT
TAEDLIDSKTNEVLFPRGTLLDEAAITAIEAIGLQSALIRSPLVCESKGGVCGTCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAVADGTLQYRELR
TITDPRGRRVSMSRNAEIAIVDLSGRERATHRLPYGAHLLFDNGHIVSKGDRIAEWDPFT
MPVITETGGQVKYQDLIEKQTLTEQTDEATGITQKIVTEYRPTSRKEDLRPRLTLLDDQS
GEAARYMLAPGAVLSVEDGQTVQAGEVLARVSRESAKTRDITGGLPRVAELFEARKPKEN
AIIAKISGRVEFGKDYKAKRKIIIRPDDGSDAVEYLVPKSKVIDVQEGDHVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITAAGDTT
LLPGEQVDREEMDEINAKAAETGGAPAEGKPILLGITKASLQTRSFISAASFQETTRVLT
EASVQGKIDSLNGLKENVIVGRLIPAGTGAGMNRLRVTATSRDAALRAAQKSWAATIAAP
DSAAQEHEAELHRSARDSAGTGDDPLGEVAASGHGTDADAGDYLNS
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagatgaccaacttcgcgaacccgctggccgccaagccggagacgttcgaccag
atccagattggcatcgcctcgccggagcgcatccgctcctggtcgttcggcgagatcaag
aagcccgagaccatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcg
cgcatcttcggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcgtctgcgagaagtgcggcgtcgaggtcaccgtttccaaggtgcgccgc
gagcggatgggccatatcgagctggccgccccggtcgcgcacatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtcctc
tatttcgaggcctatatcgtgatcgagccgggcctgaccccgctcgaaaagtatcagctg
ctcaccgaggacgagctgctcgacgcgcaggaccaatatggtgaggacgccttctcggcc
ggcatcggcgccgaggcggtccgcatcatgctcgagagcctcgatctcgagggcgagaag
gtgcagctgctcgaagagctggcggtcaccaagtccgagctgaagcccaagaagatcatc
aagcggctgaaggtcgtcgagagcttcctggaatcgggcaaccgcccggagtggatgatc
ctcgaggtcgttccggtcatcccgccggaactgcgcccgctggtgccgctggacggcggc
cgcttcgcgacgtcggatctgaacgatctgtatcgccgcgtcatcaaccgcaacaaccgc
ctcaagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgagaagcgcatg
ttgcaggaggccgtcgacgccttgttcgacaacggccgccggggccgcacgatcacgggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgattattcgggccgttcggtcatcgtgaccggg
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgcacgcctcgacgccaagggtctcagcatgacgctgaagcaggccaag
aagtgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaggtgatccgcgag
catccggtgctgctgaaccgcgcgccgacgctccaccgcctgggcatccaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagctgcacccgctggtctgctcggccttcaac
gccgacttcgacggcgaccagatggctgtccacgtcccgctgagcctcgaggcccagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccg
atcatcgtgccctcgcaggacatggtgctgggcctctattatctttcgatgatgaaggag
aatgagccgggcgaggggatgctgatctccgacatggccgaggtgcatcaggcgctgaac
gcgggtgcggtgacgctgcacaccaagatcatcagccgcgtcccgcagacggacgaggac
ggcaagcgctacatgaagcgcatcgagacgacgcccggccgcatgctgctgggcgagacc
ctgccgcagagccacaaggtgccgttcgagaccgtcaaccgcctgctgaccaagaaggag
atcggcgacgtcatcgacgtggtctatcgccacaccggccagaaggagaccgtgctgttc
gccgacggcatcatggcgctgggcttccgccacgcgttccaggccggcatctcgttcggc
aaggacgacatgatcatcccggattcgaaggtgccgctggtcgatgagaccaaggctctc
gtgaaggacttcgagcagcagtatcaggatggcctgatcacgcagcaggagaagtacaac
aaggtgatcgacgcctggtcgcgttgcggcgaccgcgtggcgggcgagatgatgaaggag
atccaggcggtcaagaaggacccggagacgggtcgcgagaagccgatcaacgccatctac
atgatggcgcattcgggtgcccgtggttccgccgcccagatcaagcagctcgccggcatg
cgcggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtcctggagtatttcaactccacccacggtgctcgcaagggcctc
gcggatacggcgctcaagaccgccaactcgggctacctcacccgccgtctggtcgacgtg
tcgcaggattgcgtcgtcgtcgagatcgattgcggcaccgagcgcgcgctggagatgaag
gcgatcgtgcagggcggcgccaccatcgcctcgctgggcgagcgtatcctgggccgcacc
acggccgaggatctgatcgacagcaagacgaacgaggtgctgttcccgcgcggcacgctg
ctggacgaagccgcgatcaccgcgatcgaggcgatcggcctgcaatcggccctgatccgc
agcccgctggtctgcgagagcaagggcggcgtttgcggcacctgctacgggcgtgacctc
gcccgtggtacgccggtcaacatcggcgaggccgtgggcgtcatcgcggcgcagtcgatc
ggcgagccgggcacccagctgacgatgcggaccttccacatcggcggcgcggcgcagctg
aacgagcagtcgaacctggaggccgtggccgacggtacgctgcaatatcgcgaactgcgc
acgatcaccgatccgcgcggtcgtcgcgtctcgatgagccgcaacgccgaaatcgcgatc
gtcgatctgtctggccgcgagcgggcgacccatcgcctgccctatggcgcgcatctgctg
ttcgacaacggccatatcgtgtcgaagggcgatcgcatcgccgagtgggatcccttcacc
atgccggtcatcaccgagaccggcggccaggtgaaatatcaggacctgatcgagaagcag
acgctgaccgagcagaccgacgaagcgaccggcatcacgcagaagatcgtgaccgaatat
cgcccgacgagccgcaaggaggatctgcgtccgcgcctgaccctgctcgacgaccagtcc
ggcgaggcggcccgctacatgctggcgccgggcgcggtgctctcggtcgaggacggccag
acggtgcaggcgggcgaggttctcgcccgtgtgagccgcgagtccgccaagacccgcgac
atcaccggcggtctgccgcgcgtcgccgagctgttcgaggcgcgcaagccgaaggaaaac
gcgatcatcgcgaaaatctccggccgggtcgaattcggcaaggattacaaggccaagcgc
aagatcatcatccgcccggacgatggcagcgacgcggtcgagtatctggtgccgaagtcg
aaggtgatcgacgttcaggaaggcgaccacgtcaagcgtggcgacaatctgatcggcggc
tcgcccgatccgcacgatattctcgaggtgctcggcatcgagccgctggcggaatatctc
gtgtcggaaatccaggaagtctatcgtctccagggcgtgaagatcaacgacaagcacatc
gagacgatcgttcgtcagatgctgcagaaggtcgagatcacggcggccggcgacacgacg
ctgctccccggcgagcaggtcgatcgcgaggagatggacgagatcaacgccaaggcggcg
gagacgggtggcgcgcctgccgagggcaagccgatcctgctcggcatcaccaaggcgtcg
ttgcagacccgcagcttcatctcggccgcgtccttccaggagacgacccgcgtgctgacc
gaggcttcggtgcagggcaagatcgactcgctgaacggcctgaaggagaatgtcatcgtc
ggccgcctgatcccggcgggcaccggcgccggcatgaaccgcctgcgcgtcaccgccacg
tcgcgcgacgcggcgctgcgggcggcgcagaagtcctgggccgcgaccatcgcggccccc
gacagcgccgcgcaggagcatgaggcggagcttcaccgctcggcccgtgactcggccggc
accggcgacgatccgctgggcgaagtcgcggcctcgggccacggcaccgacgcggatgcg
ggtgactatctgaactcgtga
DBGET
integrated database retrieval system
