Sphingomonas naphthae: PQ455_06285
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Entry
PQ455_06285 CDS
T08850
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
snap
Sphingomonas naphthae
Pathway
snap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ455_06285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snap03019
]
PQ455_06285
03016 Transfer RNA biogenesis [BR:
snap03016
]
PQ455_06285
Enzymes [BR:
snap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PQ455_06285
Messenger RNA biogenesis [BR:
snap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PQ455_06285
Transfer RNA biogenesis [BR:
snap03016
]
Prokaryotic type
tRNA degradation factors
PQ455_06285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
Symplekin_C
Motif
Other DBs
NCBI-ProteinID:
WCT74824
UniProt:
A0ABY7TNN2
LinkDB
All DBs
Position
1333043..1335295
Genome browser
AA seq
750 aa
AA seq
DB search
MTRTIKPGLPSRQQILDFIAKSDTPAGKRELAKAFGLHGADKIALKALLKDMADEGLIDS
APGRAFHKMGGVPKVTVLRIVDIDGATAFATPENWQAESPPPKLRVIERGKRQSALAIGD
RILARTEEAGQGYVAHPMKKLARGEELVLGVLHREGDRLWLKPVDKRERRELMVSDAGKA
EVGDLVLAEKAGRPPRITARVTERLGDPFQPRSFSLIAIHKFGIPDHFSEGTLEEAEAVA
KLRLGDRREDLRHLPIVAIDPVDARDHDDAVWAAPDDDPANPGGFKAVVAIADVSFYVRP
GSALDREARRRGNSVYFPDRVVPMLPEILSADVCSLKEEVDRAALVCHLTIGADGNLKAW
SFTRAVVRLAANIAYEDAQAAIDGTMPHPLTETALRPLWACWTALKAARDRREPLDLDLP
ERRVVLDEKGRIMSVAARERLDAHRLIEDYMIAANVAAAKALEAKKAPVMYRVHEVPSRE
KLVALKEYLDTFGISFALGQVIKPAVFNAIIGKLGESDDRQLIMEQVLRSQTQAYYGPAN
MGHFGLALGSYAHFTSPIRRYADLLVHRSLVGAYGLEQGKPSVAAAQPKTTLSEEDAGAM
DRIGQTISAAERRAMEAERETIDRYVAAFLSTRVGEVMTTRITGVREFGFFATVEGLGGD
GLVPVSTLGIERFRYDEAARALEGEQTGDRYATGQTLELRLVEANPISGALRFELPEGAN
HMPMRRGGKDRRPVGRRGRPPGIRHKGGKR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcaccatcaagccgggtctccccagccggcagcagatcctcgatttcatcgcg
aagagcgatacgccggcgggcaaacgcgagctggccaaggctttcggcctgcacggcgcc
gacaagatcgcgctgaaggcgttgctgaaggacatggccgacgaggggctgatcgattcg
gcgcccggccgcgccttccacaagatgggcggggtgcccaaggtcacggtgctgcggatc
gtcgacatcgatggcgccaccgcctttgccacgcccgagaattggcaggccgaaagcccc
ccgccgaagttgcgcgtgatcgagcgcggcaagcgccagtcggcgctcgccatcggcgac
cgtatcctggcgcgtaccgaggaagcggggcagggctatgtcgcccatccgatgaagaag
ctggcgcgcggcgaggagctggtgctgggcgtcctccaccgcgagggcgaccggctgtgg
ctcaagcccgtcgacaagcgcgagcggcgcgagctgatggtgtccgacgcgggcaaggcc
gaggtcggcgacctggtgctggcggaaaaggccggccgcccgccgcgcatcaccgcgcgg
gtcaccgaacggctgggcgatcccttccagccgcgcagcttcagcctgatcgcgatccac
aaattcggcattcccgatcatttcagcgagggcacgctggaggaggcggaggcggtcgcg
aagctcaggctgggcgacaggcgcgaggatctgcgccacctgccgatcgtcgcgatcgat
ccggtcgacgcgcgcgaccatgacgatgcggtatgggccgcgcccgacgacgaccccgcc
aaccccggtggcttcaaggcggtggtcgccatcgccgacgtcagcttctacgtccgcccc
ggctccgcgctggatcgcgaggcgcggcggcgcggcaacagcgtctatttccccgatcgg
gtcgtgccgatgctgcccgaaatcctttcggccgacgtctgctcgctcaaggaggaggtc
gatcgcgccgcgcttgtctgccacctgacgatcggggcggacggcaatctcaaggcctgg
tccttcacccgcgcggtcgtgcggctggcggccaatatcgcctatgaggacgcgcaggcc
gcgatcgacggcaccatgccccatccgctgaccgaaaccgccctgcgcccgctctgggcc
tgctggacggcgctgaaggcggcgcgcgaccggcgcgagccgctcgatctcgatctgccc
gagcgacgggtggtgctggacgagaaggggcggatcatgtcggtcgcggcgcgcgagcgg
ctcgatgcccaccggctgatcgaggattatatgatcgccgccaacgtggctgcggccaag
gcgctggaggccaagaaggcgccggtgatgtaccgcgtccacgaggtgccgagccgcgag
aaactggtcgcgctgaaggagtatctcgacacgttcggcatcagcttcgcgctggggcag
gtcatcaagccggcggtgttcaacgccatcatcggcaagctcggcgagagcgacgaccgc
cagctcatcatggaacaggtgctgcgatcgcagacccaggcctattacggcccggccaac
atgggccatttcggcctcgcgctgggcagctacgcccatttcaccagcccgatccgccgc
tatgccgatctgctggtgcatcgatcgctggtgggcgcctacgggctggaacagggcaag
ccctcggtcgccgccgcgcagcccaagaccacgctgagcgaggaggatgccggcgcgatg
gaccggatcggccagacgatctcggccgccgagcgccgcgcgatggaggccgagcgcgag
acgatcgaccgctacgtcgccgccttcctctcgacccgcgtgggcgaggtgatgacgacg
cggatcaccggcgtgcgcgagttcggcttcttcgccacggtggaggggctgggcggcgac
ggcctcgtgccggtctcgaccctgggcatcgaacgcttccgctacgacgaggccgcccgc
gcgctggagggcgagcagaccggcgaccgctatgccaccgggcagacgctggagctccgg
ctggtggaggccaacccgatcagcggcgcgctgcgcttcgagctgccggagggcgcgaac
cacatgccgatgcggcgcggcggcaaggatcgccggccggtcgggcggcgggggcggcca
ccggggatacggcacaagggtgggaagcgatga
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