Sphingomonas naphthae: PQ455_06340
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Entry
PQ455_06340 CDS
T08850
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
snap
Sphingomonas naphthae
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_06340 (addB)
Enzymes [BR:
snap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PQ455_06340 (addB)
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PQ455_06340 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WCT74833
LinkDB
All DBs
Position
1344321..1347236
Genome browser
AA seq
971 aa
AA seq
DB search
MSRPSVFSIPLHRSFADALAAGLLRWTKEEPLGLAQTLLLVPGNRAGLAIRDAFVRRAEG
GLLLPRIVAIGDPELDEKLGAALDPIDDGAPIPPAIDPLDRRLILARLLTESRVGDPIET
VEAMRLAGDLGRVIDQMLIEGIDPAALADVVPADLARHWESSLAVLRLVLDRWPEELRAR
GLIDLADRRGRLLARADARWRSAPPAGRVVAAGISGGGAAVAALLRTVSRLERGAVVLAG
VDLDMPQEEWDSLGPTDGQRAEETHPQYHLKRLLDAMDVGRGEVEGWRYGGGRDAPAVRT
RAISNALAPAAFTAKWQTLPVAERRLTGVKSAVFATPAEEAQAIAVALREAVQTEGRTAA
LVTPDRMLARRVSAHLRRWGIEADDSAGRALSSTPPATLLLALAEAAAEGFAPVALMTLL
KHPLVNGGGERLPWLEKVRRLDRALRGPRPAAGLGAITAHLEQGRREKAIEDWAAIRPLL
EPLEAAFVDGPPSALVAALREAVARLAGDAAWGRPAGRATAALVASLEEALPLGPRHVRA
DAFPAVLKLLLDEISVRPPQGGHPRISIWGLIEARLQQPDLTILGGLNEGVWPSRPAPDP
WLAPAIRAALGLPGIERRIGIQAHDLATALGGREVLVTRARRDARAPAIASRFWLRMEAM
TSGLTLAPQFARLAEALDRPKDFRPAGRPAPSPPVEDRPRRIAVTRLDRLKADPFAFYAS
QMLRLSEWDAIDADPTPAWRGSQVHKVIEEWLTEDDCRPDELRARAERMLANVARHPVLH
AMWTPRLLEAIERLGGFVADNRGAGRVPLVAERKGRIEIEGVTLEGTADRIDRLPTGGLA
IVDYKTGQPPSGKAVIEGYSMQLGLLGLIADRGGFEGIEGKAGEFEYWSLAADRKSGDLG
YVQSAVGLKRDGSGIEPGDFTDVAARNLIAAVQTWLLGEEPFTAKLHPDYSPYEDYDQLM
RLDEWYGARDL
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgacccagcgtcttcagcatcccgctccaccgctcgttcgccgatgcgctggcg
gcggggctgctgcgctggacgaaggaggaaccgctcgggctggcgcaaaccctgctgctg
gtgccgggcaatcgcgcggggctggccatccgcgacgccttcgtgcggcgggcggaaggg
gggctgctgttgccgcgcatcgtggcgatcggcgatcccgaactggacgagaaactgggc
gctgcgctcgaccccattgacgatggagcaccgatcccgccggcgatcgatccgctcgat
cgccggctgatcctcgcccgattgctcaccgagagccgcgtgggcgacccgatcgagacg
gtcgaggcgatgcggctggcgggcgatctggggcgggtgatcgatcagatgctgatcgag
gggatcgatccggcggcgctggcggatgtggtgccggccgatctggcgcggcattgggaa
agctcgctggcggtgctgcggctggtgctggatcgctggccggaggaattgcgcgcgcgc
gggctgatcgatctggcggatcggcgggggcggttgctggcgcgggccgatgcgcggtgg
cggagcgcgccgccggccgggcgcgtggtggcggcgggaatttcgggcggtggcgcggcg
gtggcggcgctgctcaggacggtgtcgcggctggagcgcggcgcggtggtgctggcgggc
gtcgatctcgacatgccgcaggaggaatgggattcgctcgggcccaccgatggccagcgg
gccgaggagacgcatccgcaatatcatctgaaacggctgctcgatgcgatggatgtcggg
cggggcgaggtcgagggctggcgatacggcggcgggcgcgatgcgccggcggtcaggacg
cgggcgatctccaacgcgctggcgccggccgccttcaccgcgaagtggcaaaccctgccg
gtggctgagcggcggctgacgggggtgaagagcgcggtgttcgcaacgccggccgaggag
gcgcaggcgatcgcggtggcgttgcgcgaggcggtccagaccgaggggcgcaccgccgcg
ctcgttacaccggatcggatgctggcgcggcgggtgtcggcgcacctgcggcgctggggg
atcgaggcggacgacagcgccggccgggcgctctcctcgacgccgcccgccacccttctg
ctggcgctggccgaggcggcggcggagggcttcgcgccggtcgcgctgatgaccctgctc
aagcatcccctggtcaacggtgggggcgagcgcctgccgtggctggagaaggtgcggcgg
ctggatcgcgcgctgcgcgggccgaggccggcggcggggctgggcgcgatcacggcgcat
ctggagcagggccggcgcgagaaagcgatcgaggattgggccgccatccgcccgctgctc
gaaccgctcgaagcggccttcgtcgatggaccaccgagcgcgctggtcgcggcgctgcgc
gaggcggtggcgcggctggcgggtgacgcggcgtggggccggccggcggggcgcgcgacg
gcggcgctggtggccagtctggaagaggcgctgccgctcgggccgcgccatgtgcgggcg
gatgcctttccggcggtgctgaagctgctgctcgacgagatttcggtgcggccgccgcag
ggcggtcatccgcgcatctcgatctgggggctgatcgaggcgcggttgcaacagcccgac
ctcaccatattgggcgggctgaacgagggggtatggccgtcgcggccggcgcccgatccg
tggctggcgcccgcgatccgcgcggcgctgggcctgccggggatcgagcggcggatcggc
atccaggcgcacgatctggcgacggcgctgggcgggcgcgaggtgctggtgacgcgggcg
cggcgcgacgcccgcgcgccggcgatcgcctcgcgcttctggctgcggatggaggcgatg
acgagcgggctgacgctcgcgccgcagttcgcacggctcgccgaggcgctggatcgcccg
aaggatttccgccccgccggccgccccgcgccgagcccgccggtcgaggatcgcccgcgc
cggatcgcggtgacgcggctggatcggctgaaggcggaccccttcgctttctacgccagc
cagatgctgcgcctgtccgaatgggatgcgatcgacgccgatccgacgccggcgtggcgc
ggcagccaggtccacaaggtaatcgaggagtggctgaccgaggatgattgccgccccgac
gaattgcgcgcgcgggccgagcggatgctggcgaacgtcgcgcgccatccggtgctgcac
gcgatgtggacgccgcgcctgctggaagcgatcgagcgactgggcgggttcgtggcggac
aatcggggggcggggcgcgtgccgctggtcgccgagcgcaaggggcggatcgagatcgag
ggggtcacgcttgagggcaccgccgaccggatcgaccggctgccgaccgggggccttgcc
atcgtcgattacaagactggccagccgccgagcggcaaggcggtgatcgagggctattcg
atgcagctcggcctgctcgggctgatcgccgatcgcggcggcttcgaggggatcgagggc
aaggccggcgagttcgaatattggtcgctggcggcggaccggaaatcgggtgacctcggc
tatgtccagtcggcggtcgggctgaagcgcgacggatcggggatcgagccgggcgacttc
accgatgtggcggcgcgcaacctgatcgcggctgtgcaaacatggctgctgggcgaggag
cccttcaccgccaagctgcacccggattattcgccttatgaggattacgaccagctgatg
cggctcgacgaatggtatggggcacgcgacctgtga
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