Sphingomonas naphthae: PQ455_06660
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Entry
PQ455_06660 CDS
T08850
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snap
Sphingomonas naphthae
Pathway
snap03030
DNA replication
snap03430
Mismatch repair
snap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ455_06660 (dnaE)
03430 Mismatch repair
PQ455_06660 (dnaE)
03440 Homologous recombination
PQ455_06660 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snap03032
]
PQ455_06660 (dnaE)
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_06660 (dnaE)
Enzymes [BR:
snap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PQ455_06660 (dnaE)
DNA replication proteins [BR:
snap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PQ455_06660 (dnaE)
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PQ455_06660 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
DUF655
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
WCT75413
LinkDB
All DBs
Position
1421550..1424993
Genome browser
AA seq
1147 aa
AA seq
DB search
MLEGSIDPKEIASASRKLGFPAAAITDRNGLYGAMAYSDAAAKSGVQPVIGAMLAVARPG
TPEGKPALLDWLALYAQDKAGYDNLCALVSQAHLARPPHEPAHVAMGDLEGRTDGLIALT
AGGEGGIARLFAEDQPAGARAYCTRLEGLFPQRLYIELARRGDRVEERAEDELVALAYDH
DLPLVATNPAFFAEPGFHAAHDAMLCIAGSAYVDQDERARSSPDTWLKPADEMARLFADL
PEAIANTLVVAERCAVAAPKRKPILPSLAGDREAESEQLRVDSRAGLALRLAGRTLSDME
RAAYFERLDFELDVIVGMGFPGYFLIVADFIKWAKEQDIPVGPGRGSGAGSVVAWALTIT
DLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRGEVISYVQKKYGADHVAQIITFGRLK
ARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLGRALNGVSELAQEYKNDKDVRRLF
DLAGKLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDFPVTQFDMKYVEGAGLVKFD
FLGLKTLSVLQKAVEMLAKRGVTVDLPALEWDDPAVYALLQKGDTVGVFQLESEGMRRTL
AAVRPTNFEDIIALVSLYRPGPMDNIPMFGARKNGREEIEYPHILLEPILKETYGIFVYQ
EQVMQAAQILAGYSLGGADMLRRAMGKKVQAEMDAQRSIFVEGCASVNAIPAAKANELFD
LIDKFAGYGFNKSHAAAYALVAYHTAWMKAHHKPEFYAASMCYDMALTDKLTIFVDDMRR
LGVECLGPDVNHSEAEYTVEAGKVRYALGALKNVGEKAMEQLVAERSANGRFTSLDDFAN
RVDPKLLNRRQIESLAAGGAFDSIDPDRAQVHGGAETILAHAASAHGERESGQGGLFGDA
GTGTSAIRLPKVAHWSLAERMSAEKDAFGFYFSAHPTDRYRHLSDAYGVKSFADLGSVPS
FEVTYDDRGKRSEAPTWKMAALVEDARWRTSAKGRRYMMATCSDASGQFIATCFDDLVSA
DLEQAAKAGGCGLLTVEVDRRPGEETPRVTIRGVQPFEGMATTVRLRLTIETDDPRALPA
LAQLVAGARGGRGEIRLIAHLPDGGILPMALGGDFQLDAELAARIERLPRVTTTLATVPV
PSLRMVS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagggtcgatcgaccccaaggagattgcgtcggcctcgcgcaagctgggcttc
ccggcggcggcgatcaccgatcgtaacggcctgtatggcgcgatggcctattcggacgcg
gcggcgaaatcgggcgtgcagcccgtcataggcgcgatgctggcggtggcgcgacccggc
acgcccgagggcaagccggcgctgctcgactggctggcgctctacgcgcaggacaaggcc
ggttacgacaatctgtgcgcgctcgtcagccaggcgcacctcgcccggccgccgcacgag
ccggcgcatgtcgcgatgggcgatctcgagggccgcaccgatggcctgatcgcgctgacg
gcgggcggggagggcggcatcgcccggctcttcgccgaggatcagcctgctggcgcgcga
gcctattgcacccggctggaagggttgttcccccagcggctctacatcgaactcgcccgg
cgcggtgatcgggtggaggagcgcgccgaggacgaactggtcgcgctcgcctatgatcat
gatctgcccttggtcgcgaccaacccggccttttttgccgagcccggcttccacgccgcg
cacgatgccatgctgtgcatcgcgggatcggcctatgtggatcaggacgagcgggcgcgg
tcgtcgcccgatacctggctgaagcccgccgacgagatggcgcggctgttcgccgatctg
cccgaggcgatcgccaatacgctggtcgtggccgaacgctgcgcggtggcggcgcccaag
cgcaagccgatcctgccgagcctcgccggcgatcgcgaggcggaatccgaacaattgcgg
gtggattcgcgcgccggcctcgccctgcggctcgccgggcggaccttgagcgacatggag
cgcgcggcctatttcgaacggctcgatttcgagctggacgtgatcgtcggcatgggcttt
ccgggttacttcctgatcgtcgccgacttcatcaaatgggcgaaggaacaggatattccg
gtagggccggggcgcggatcgggcgccggctcggtcgtcgcctgggcgctcaccatcacc
gatctcgatccgctgcggctgggcctgctgttcgaacgcttcctcaatcccgagcgcgtg
tcgatgcccgacttcgacatcgatttctgcgaaacgcggcgtggcgaggtcatcagctac
gtccagaagaaatatggcgccgatcatgtggcgcagatcatcaccttcgggcggctgaag
gcgcgcgcggtgctgaaggataccggccgcgtgctccagatgagctacggccaggtcgat
cgcctcgccaagctggtgcccaaccacccgaccgacccgtggacgctcggccgcgccctc
aacggcgtgtcggaactggcgcaggaatataagaacgacaaggatgtacggcggctattt
gatctggcgggtaagctggaagggctgccgcgccacagctcgacccatgccgccggcgtg
gtgatcggcgatcggccgctcgatcaactcgtcccgctctaccgcgatccgcgctccgat
ttcccggtcacccagttcgacatgaaatatgtcgaaggcgcggggttggtgaagttcgac
ttcctcggcctcaagacgctatcggtgttgcagaaggcggtcgagatgctcgcaaagcgc
ggcgtgacggtcgatctgcccgcgctcgaatgggacgatccggcggtctatgccctgctc
cagaagggcgacacggtcggggtgttccagctggaatcggaagggatgcggcggacgctg
gcggccgtccgcccgaccaatttcgaggatatcatcgcgctggtgtcgctctaccggccc
ggcccgatggacaatatcccgatgttcggcgcccgcaagaacggccgggaagagattgaa
tatccccacatcctgctcgaaccgatcctgaaggagacctacgggatcttcgtctatcag
gaacaggtgatgcaggccgcgcagatcctggcgggctattcgctgggcggcgccgacatg
ctccgccgcgcgatgggcaagaaggtgcaggcggagatggatgcccagcggagcatcttc
gtcgagggctgcgcctcggtgaacgccatcccggcggccaaggccaacgagctgttcgac
ctgatcgacaaattcgcgggctacggcttcaacaagagccacgcggccgcctatgcgctg
gtcgcctatcatacggcgtggatgaaggcgcaccacaagccggaattctatgccgcttcc
atgtgttacgacatggccttgacggacaagctcaccatcttcgtcgacgatatgcggcgg
ttgggggtggaatgcctcggcccggacgtgaaccatagcgaggcggaatatacggtcgag
gcggggaaggtccgctacgccttgggcgcgctcaagaatgtcggcgagaaggcgatggaa
cagctggtcgccgagcggtcggccaacgggcgcttcacctcgctcgacgacttcgccaac
cgggtcgatcccaagctgctcaaccgccgccagatcgaaagcctcgccgcggggggggca
ttcgattcgatcgatcccgatcgcgcgcaggtgcatggcggggccgagacgatcctcgct
catgccgcctcggcgcatggcgagcgcgagagcgggcagggcgggctgttcggcgacgcc
ggcaccggcacgagcgcgatccgcttgcccaaggtggcgcattggagcctcgccgagcgg
atgtcggcggagaaggacgctttcggcttctacttctcggcgcacccgaccgatcgctat
cgccatctgtccgacgcttatggggtcaagagcttcgccgatctgggatcggtgccgagc
ttcgaggtgacctatgacgatcgcggcaagcgcagcgaggcgccgacctggaagatggcc
gcgctggtcgaggatgcgcgctggcgcacctccgccaaggggcggcgctacatgatggcg
acctgctcggacgcctcgggccagttcatcgcgacctgcttcgacgatctcgtctcggcc
gatctggagcaggcggccaaggcgggcggctgcgggctgctgacggtcgaggtggatcgc
cgccccggcgaggaaacgccgagggtgacgatccggggggtccagccgttcgagggcatg
gcgacgaccgtgcgcctgcgcctgacgatcgagaccgacgacccacgggcgctgccggcg
ctggcgcaactggtggccggcgcgcgcggcgggcggggcgaaatccggctgatcgcgcac
ctgcccgatgggggcatcctgccgatggcgctgggtggggatttccagttggatgccgaa
ctggccgcgcggatcgagcggttgccgagggttacgacgaccctggcgacagtgccggtg
ccgtcgctacggatggtttcctga
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