Sphingomonas naphthae: PQ455_06700
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Entry
PQ455_06700 CDS
T08850
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
snap
Sphingomonas naphthae
Pathway
snap02020
Two-component system
snap02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PQ455_06700 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PQ455_06700 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snap03021
]
PQ455_06700 (rpoN)
Transcription machinery [BR:
snap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PQ455_06700 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
HTH_Crp_2
HTH_AraC
Rv2175c_wHTH
Motif
Other DBs
NCBI-ProteinID:
WCT74902
LinkDB
All DBs
Position
complement(1436492..1437985)
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AA seq
497 aa
AA seq
DB search
MSLAPRLDIRQSQSLVMTPQLQQAIRLLALSNLEIEGFIAEEIDKNPLLETGGVADEREA
AAEAPDPSTMDDGPPDEPVTADRLIEAGDAIADAPLDADYAAETFHHDSVADSPGPSTEG
IAGPGGEEMPDLDLLGAAPPSLAEHLAAQAGEQLSGVDLAIALHLIDQIDEAGYLTVPLP
EVAQRLDVALHHVERVLGVIHGLDPTGVGARGLAECIALQAREADRYDPAMATLIANLDL
LARGALPQLRRMCGVDEEDFADMIRELRAYDPKPGLRFGSTRIEAVSPDIHVMRRGPGWA
VELNGATLPRLLVNRSYYSELQGGPQNRESKAWLADCLASANWLVKALDQRARTILKVAS
EIVTQQEAFFARGVAHLKPMTLKMVADAIGMHESTVSRVTSNKYLSCDRGLYELKYFFTS
AIQSADGGEAASANAVKDRIARLIAAESPKDILSDDKLVDLLNAEGFGIARRTVAKYREA
IGLGSSVQRRRQKALGA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgccccccgcctcgacatccgccagtcgcaatcgctggtgatgaccccgcag
ttgcagcaggcgatccgcctgctcgcgctctccaatctggagatcgaggggttcatcgcc
gaggagatcgacaagaaccccctgctcgaaaccggcggcgtcgccgacgagcgcgaggcc
gccgccgaagcgcccgacccttcgacgatggacgacggcccgcccgacgaacccgtcaca
gccgaccggctgatcgaggccggcgacgccatcgccgacgcgccgctcgacgcggattat
gccgccgagacctttcatcacgacagcgtcgccgacagccccggcccctcgaccgagggc
atcgccggcccgggcggcgaggagatgcccgacctcgacctgctcggcgccgcgccgccc
agtctggccgagcatctggcggcgcaggcgggcgagcagctgtcgggcgtcgatctcgcc
atcgcgctccacctgatcgaccagatcgacgaggcgggttacctcacggtgccgttgccc
gaggtggcgcagcggctcgacgtggcgctccatcatgtcgagcgggtgctgggtgtgatc
cacgggctcgacccgaccggcgtcggcgcgcgcggcctggccgagtgcatcgccctccag
gcgcgcgaggccgaccgctacgaccccgccatggcgaccctgatcgccaatctcgacctg
ctcgcgcgcggcgccttgccccagctccgccggatgtgcggcgtggacgaggaggatttc
gccgacatgatccgcgagctgcgcgcctacgatcccaaacccggcctgcgcttcggatcg
acccggatcgaggcggtgtcgcccgacatccacgtcatgcggcgcggccccggctgggcg
gtcgaactgaacggcgccaccctcccccgcctgctcgtcaatcgcagctattacagcgag
ttgcagggcggccctcaaaatcgcgagagcaaggcgtggctggccgattgcctcgccagc
gccaactggctggtcaaggcgctcgaccaacgcgcgcgcaccatattgaaggtcgccagc
gagatcgtcacgcagcaggaagccttcttcgcgcgcggcgtggcgcatctgaagccgatg
acgctgaagatggtcgccgatgcgatcggcatgcacgaatcgaccgtaagccgcgtcacg
tccaacaaatatctgtcgtgcgaccggggcctctacgaactcaaatatttcttcacgagc
gcgatccagtccgccgacggcggcgaggccgcatcggccaacgccgtgaaggaccgcatc
gccaggctgatcgccgccgagagcccgaaggacatcctctccgacgacaaattggtcgac
ctgctcaacgccgaaggcttcggcatcgcccgccgcacggtggcgaaatatcgcgaggcg
atcgggctgggatcgtcggtgcagcggcggcgacagaaggcgctgggcgcctga
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