Sphingomonas naphthae: PQ455_06720
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Entry
PQ455_06720 CDS
T08850
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
snap
Sphingomonas naphthae
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snap03016
]
PQ455_06720
Enzymes [BR:
snap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PQ455_06720
Transfer RNA biogenesis [BR:
snap03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PQ455_06720
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
WCT74906
LinkDB
All DBs
Position
complement(1440159..1440776)
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AA seq
205 aa
AA seq
DB search
MSVYLHEEDLPEGVLAPGPVAVDTETMGLITPRDRLCLLQISDGGGDEHLVRFGPGSDYA
APNLRAVLADPARLKLYHFARFDLAAIRHYMGVVAGPVYCTKIASRLIRTYTDRHGLKEL
ARELLGQDVSKQQQSSDWGAPELSEAQKDYAASDVRFLHAMKVKLDERLIREGRMELAQA
CFDFLPHRAELDLAGWPEIDIFAHA
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtttacctgcatgaagaggatctgcccgagggcgtcctcgcccccggccccgtc
gccgtcgataccgagacgatgggcctcatcaccccgcgcgaccggctgtgcctgctccag
atctcggacgggggcggcgacgagcatctcgtccgcttcgggccgggcagcgactatgcc
gcgccgaacctgcgcgcggtgctggccgatccggcgcggctgaagctctaccatttcgcc
cgcttcgatctggcggcgatccgccattacatgggcgtggtggccggcccggtctattgc
accaagatcgcctcgcgcctgatccgcacctacaccgatcgccacggcctgaaggagctg
gcgcgcgaactgctcgggcaggatgtgtccaagcagcagcaatcgtccgactggggcgcg
cccgagctttcggaggcgcagaaggattatgccgcctccgacgtgcgcttcctgcatgcg
atgaaggtaaagctggacgagcggctgatccgcgagggccggatggaactggcgcaggcc
tgcttcgatttcctgccgcaccgcgccgagctggatctcgccggctggcccgaaatcgac
atcttcgcccacgcctga
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