Sphingomonas naphthae: PQ455_06835
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Entry
PQ455_06835 CDS
T08850
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
snap
Sphingomonas naphthae
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snap03019
]
PQ455_06835 (hrpB)
Enzymes [BR:
snap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PQ455_06835 (hrpB)
Messenger RNA biogenesis [BR:
snap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PQ455_06835 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WCT74927
LinkDB
All DBs
Position
1463212..1465701
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AA seq
829 aa
AA seq
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MTLPIHTVLPELIASLDATPNAVLVAPPGAGKTTAVAPALLDRPWCTGRILLLQPRRLAA
RAAAERMANTAGEQIGGRIGFATRLDSRQSAATRLLVVTQGIFTNMIQADPELAGISAVL
FDEVHERSLDGDFGLALALDAQGALRPDLRLVAMSATLEGGRFSALLGAAPVIESEGRAH
PIELRHIGRDAGQRIEDQMAAAIRRAVMETEGGILAFLPGVAEIERTAERLANLPGDVRL
HRLHGTLDPAEQRRAIAAEPDGARKLVLATSIAETSLTLDGVSVVVDSGLARRPRYDRAA
GMTRLVTERVSRAAATQRAGRAGRQRPGIVYRLWEAAATAGLPAYDPPEILEADLSALLL
ACGLWGVTDPASLAWIDPPPAAAVAEARGRLARFGMIDGDGRPTPHGKAAARLPLPPRLG
HMLLAAEAIGLGRVAAEVAVLLSERGVGGSDADLDARLRRWRGERGAKAEQARGLARRWV
ELATKSPFALSIVEGRAPSVASGRTSFDFAQDERRVGIAIALGFPDRVARRRSATGEDWI
SAGGRGFRLDGTSPLASAEWLAVAETQGSAAGARILSAAPIDPAAIEALFGDTIETVRKV
AFDPATGGVQPTRERRLGAIRLSRGPDTQAEPAAIAAALLEGVRIHGLARLPWSDTATAL
RERAAYAGTDLSDAVLIARLDEWLPPLLAGRRKLADIAPGALTEALNDLLGWEGKRAIDA
AAPSHFTSPAGSTHPIDYAAEGGPAVELRPQALYGLTRHPVIGRDTPLVLRLTSPAGRPI
QTTRDLPGFWAGSWAAVAREMRGRYPRHPWPDDPTVADPTLRTKKRAGT
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcccgatccacacggtcctgcccgagctgatcgccagcctcgacgcgaccccc
aacgccgtcctcgtcgccccgcccggcgcgggcaagaccaccgccgtcgcccccgccttg
ctcgaccggccgtggtgcaccgggcgcatcctcctcctccagccccgccgcctcgccgcg
cgcgccgccgccgagcggatggccaataccgccggcgagcagatcggagggcgcatcggc
tttgccacccggctcgacagccgccagtccgccgcgacccggctgctcgtcgtgacgcag
ggcatcttcaccaacatgatccaggccgatcccgagctggcgggcatatcggcggtgctg
ttcgacgaggttcatgagcgcagcctcgacggcgatttcggcctcgcgctggcgctcgac
gcgcagggggcgctgcggcccgacctgcgcctcgtcgccatgtcggccacgctggagggc
gggcgcttctccgcgttgctgggcgcggcacccgtgatcgagagcgaggggcgggcgcat
ccgatcgagctgcgccacatcggccgcgacgcgggccagcggatcgaggaccagatggcc
gccgccatccgccgcgccgtgatggagaccgagggcggcatcctcgccttcctgcccggc
gtcgccgagatcgagcgcaccgccgagcggctcgccaatctgcccggcgacgtgcgcctg
caccgcctccacggcacgctcgaccccgccgaacagcgccgcgccatcgccgccgagccc
gatggcgcgcggaagctcgtgctggccacctcgatcgcggagaccagcctcacgctcgat
ggcgtgtcggtggtggtcgattcggggctggcgcggcgcccgcgttacgatcgggcggca
gggatgacccggctcgtcaccgaacgggtcagccgggcggcggccacgcagcgcgcgggc
cgcgccgggcgccagcggccggggatcgtctatcgactgtgggaggcggcggcgaccgcc
ggcctgccggcctatgacccgcccgagatattggaggcggacctgtcggcgctgctgctg
gcgtgcggcctgtggggcgtgaccgatccggcgagtctcgcgtggatcgatccgccgccc
gccgccgccgttgcggaggcgcgcgggcggctggcgcgcttcgggatgatcgacggcgac
ggccggccgaccccgcacggcaaggccgccgcgcgcctgccgctgccgccgaggctgggg
catatgctgctggcggccgaggcgatcgggctgggccgggtcgcggcggaggtggcggtg
ctgctgtccgaacgcggggtcggcgggagcgacgccgatctggatgcgcgcctgcggcgc
tggcgcggcgaacgtggtgcgaaggccgagcaggcgagggggctggcgcggcggtgggtg
gagcttgccacaaagtcaccgttcgccctgagcatagtcgaagggcgtgccccaagcgtt
gcgtccggccgcacgtccttcgacttcgctcaggacgaacggagagtgggcatcgccatc
gccctcggtttccccgatcgcgtcgccaggcgccgttccgccaccggcgaggactggatc
tccgccggcgggcgcggctttcggcttgacggtacttccccgctcgcctcggccgaatgg
cttgccgtggccgaaacccaagggtcggcggccggcgcacgcatcctctccgccgcgccg
atcgaccccgccgcgatcgaggcgctgttcggtgacacgatagaaaccgtccgcaaggtc
gccttcgatcccgcgaccggcggcgtccagcccactcgcgagcggcggctcggcgcgatc
cgcctgtcgcgcgggccggatacgcaggcggagcccgccgcgatcgcggcggcgctgctg
gagggcgtccgcatccacggcctcgcgcgcctgccctggtccgacacggccacggccctt
cgcgaacgcgcggcctatgccggcaccgatctgtccgacgcggtcctgatcgcccggctc
gacgaatggctccctccgctcctcgccggccgtcgcaagctcgccgatatcgcccccggc
gcgctcaccgaggcgctcaacgacctgctcggctgggagggcaagcgcgcgatcgacgcg
gcggcgccgtcgcatttcaccagcccggccggcagcacccacccgatcgattatgcggcg
gagggcggcccggcggtcgagctgcgcccgcaggcgctctacggcctcacccgccatccg
gtgatcggccgcgacacgccgctggtgctgcgcctcacctcgcccgccggccgcccgatc
cagacgacgcgcgacctgccgggcttctgggcgggaagctgggcggcggtcgccagggag
atgcgcggccgctacccgcgccacccctggcccgatgatccgaccgtcgccgaccccacc
ttgcgcaccaagaagcgtgccggcacttga
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