Sphingomonas naphthae: PQ455_08240
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Entry
PQ455_08240 CDS
T08850
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
snap
Sphingomonas naphthae
Pathway
snap00541
Biosynthesis of various nucleotide sugars
snap01100
Metabolic pathways
snap01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PQ455_08240 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
snap01005
]
PQ455_08240 (rfaD)
Enzymes [BR:
snap01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
PQ455_08240 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
snap01005
]
Core region
PQ455_08240 (rfaD)
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
Motif
Other DBs
NCBI-ProteinID:
WCT75194
LinkDB
All DBs
Position
complement(1735213..1736199)
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AA seq
328 aa
AA seq
DB search
MIVVTGAAGFIGSNIVADLEARGDGPIAVVDWFGTDERWRNLAKRRIRHFVKPEVILPFL
DAHAAEIRAVIHMGAISATTERDVDRLVDLNINYTVALWDWCTKHQVPLIYASSAATYGG
IETGFTDDDSLAAQQALQPLNAYGWSKKATDVIFAERVAAGEPTPPQWAGLKFFNVYGPN
EYHKDDMMSVACKLHAQVTAGEKVRLFKSYRDGIADGDQRRDFVYVRDCTRSILWLLDNK
FDNGVFNIGSGEARSFLDIAKALGRVMNKAVDVEYIEMPESIRDRYQYFTEAEMGKLRGM
GYDAPATSLEDGVADYVFEHLGREDRYR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtcgtcacaggggccgccgggttcatcggctcgaatatcgtcgcggatctcgag
gcgcggggggacgggccgatcgcggtggtggactggttcggcaccgacgagcggtggcgc
aatctggccaagcggcgcatccgccatttcgtgaagccggaggtgatccttcccttcctc
gacgcgcacgccgccgagatccgcgcggtgatccacatgggcgccatctcggcgacgacc
gagcgcgacgtggacaggctcgtcgatctcaacatcaattatacggtcgcgctgtgggac
tggtgcaccaagcatcaggtgccgctgatctacgcctcgtcggccgcgacctatggcggg
atcgagacgggcttcaccgacgacgacagcctcgccgcgcagcaggcgctccagccgctc
aacgcttatgggtggagcaagaaggcgaccgacgtgatcttcgccgagcgggtggcggcg
ggcgagccgacgccgccgcaatgggccgggctcaagttcttcaacgtctatggcccgaac
gaatatcacaaggacgacatgatgtcggtcgcgtgcaagctgcacgcgcaggtgacggcc
ggcgaaaaggtgcggctgttcaagtcgtatcgcgacggcatcgccgacggcgatcagcgg
cgcgacttcgtctatgtccgcgattgcacgcggtcgatcctgtggctgctcgataacaag
ttcgacaatggcgtgttcaacatcggatcgggagaggcgcggtccttcctggatatcgcc
aaggcgctcggccgggtgatgaacaaggccgtcgacgtcgaatatatcgagatgccggaa
tcgatccgcgatcgatatcaatacttcaccgaggcggagatggggaagctgcgcggcatg
ggctatgacgcgccggcgacgtcgctggaggacggggtggcggactatgtgttcgagcat
ctcggccgcgaggatcgctatcgctga
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