Sphingomonas naphthae: PQ455_10575
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Entry
PQ455_10575 CDS
T08850
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
snap
Sphingomonas naphthae
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snap03032
]
PQ455_10575
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_10575
Enzymes [BR:
snap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PQ455_10575
DNA replication proteins [BR:
snap03032
]
Prokaryotic type
DNA Topoisomerases
PQ455_10575
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PQ455_10575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WCT72091
LinkDB
All DBs
Position
2227371..2228429
Genome browser
AA seq
352 aa
AA seq
DB search
MTAKSAANDPHPLPSKLVYVDDQLPGISRRKSGHGWAYFDARGQRIRDREEIDRLNAVAM
PPAYKDCWFCPSPHGHILATGFDEKGRKQYRYHPAFREAKDSAKYERCADFGRHLPLLRA
RVEADLAGRKLARDTVLAAIVRLLDLGRVRVGNEAYAKANKSFGATTLRNRHAKVSGSKL
RLEYLGKSGKMQKLTIEDGRLARIVRRCQDLPGQHLFQYLDDDGARHGVGSADVNAYIRE
ATGEDFSAKDFRTWGASVLAFDHIWAAGAEGKVSLKGMLEEVAAALGNTPAISRKSYVHP
ALIEMCKTGDVTSLCEARLPRATRYLNPHERALIAFLDELASATSKETAKAA
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaaatccgctgccaacgatccgcacccgctcccctccaagctggtctatgtc
gacgaccagctgcccggcatctcccgcaggaaatcgggccatggctgggcctatttcgat
gccaggggccagcgcatcagggatcgcgaggagatcgaccggctgaacgcggtcgcgatg
ccgccggcctataaggattgctggttctgcccctcgccgcacggccatatcctggcgacc
ggcttcgacgagaaggggcgcaagcaatatcgctaccaccccgcctttcgcgaggcgaag
gacagcgccaaatatgagcggtgcgccgatttcgggcgccacctgcccctgctgcgcgcg
cgggtcgaggccgatctggcggggcgcaagctggcgcgggatacggtgctcgcggcgatc
gtgcggctgctcgatctggggcgcgtgcgggtgggcaacgaggcctatgccaaggccaac
aagagtttcggggcgacgaccttgcgcaaccgccacgccaaggtcagcggatcgaagctc
cgcctcgaatatctcggcaagtccggcaagatgcagaagctgacgatcgaggacgggcgg
ctggcgcggatcgtgcggcgctgccaggatctgccggggcagcatctgttccaatatctc
gacgacgacggcgcgcgccacggcgtcggatcggccgacgtgaacgcctatatccgcgag
gcgaccggcgaggatttcagcgccaaggatttccgcacctggggcgccagcgtgctcgcc
ttcgaccatatctgggcggcgggcgccgaggggaaggtctcgctgaaggggatgctggag
gaggtggcggcggcgctgggcaacacgcccgcgatcagccgcaaatcctatgttcatccc
gccctcatcgaaatgtgcaagacgggcgacgtgacatcgctgtgcgaggcgcgcctgccg
cgtgctacgcgctatctgaacccccatgagcgcgcgctgatcgccttcctcgacgaactg
gccagcgcgacatccaaggagacggccaaggccgcctga
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