Sphingomonas naphthae: PQ455_12860
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Entry
PQ455_12860 CDS
T08850
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
snap
Sphingomonas naphthae
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snap03032
]
PQ455_12860 (topA)
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_12860 (topA)
Enzymes [BR:
snap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PQ455_12860 (topA)
DNA replication proteins [BR:
snap03032
]
Prokaryotic type
DNA Topoisomerases
PQ455_12860 (topA)
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PQ455_12860 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
DUF7343
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WCT72522
LinkDB
All DBs
Position
complement(2672993..2675548)
Genome browser
AA seq
851 aa
AA seq
DB search
MKLVVVESPAKAKTIEKYLGPGHRVLASYGHVRDLPAKDGSVNPDEGFAMEWEAYADKAK
QLKMIADEAKTADTLILATDPDREGEAISWHVQEVLRKRKALPKDVQRVTFNAITKPAVL
EAMANPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVSLRLIVDRE
REIELFRPQEYWSVAAAMEHDGVPFTARLVRWRGDKIDRLTIGNGGDAEQAKKDVEAGRF
TVVSVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRVAQNLYEDGAITYMRTDGVQ
MDGGAISEARRAIADRYDAGYVPDKPRQYQTKAKNAQEAHEAIRPTDFARDKAGTGDHAR
LYELIFKRALASQMASARLERTVAEMTDGTGQHALRATGQVVIFPGYLALYEEGRDDEAD
EDAKRLPRLTEGGVPAKKSVTAEQHFTQPPPRYSEASLVKKMEELGIGRPSTYASILQTL
KDRDYVTLEKNRFIPNESGRLVTSFLERFFERYVSYDYTAGLEDQLDDVSGGRAGWQAVL
EAFWRDFKPKTAEVMEQKPSEVTAALDEFLAPYLFPDKGDGSDPRACPACADGRLALRGG
RFGAFVACSNYPECKYTRRFAQGGGEGAAADTGPADLGTDPASGEAVTKRSGRFGTYVQL
GDGKDAKRSSIPKDVPEADLDLPMALKLLSLPRTIGAHPESGNPITASIGRYGPYLAHDG
KYARLTSTAEVFETGMNAAVVKLAEAAAGGGRPQRGAAREPLKAFGDSPVTGKPVRLLEG
RFGPYVTDGETNATLPKSADPQALTEEAALLLLAERAAKGGPTKAKKKPAAKKAAPAKKA
PAKKAPAKAKA
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgtcgtcgtcgaatcacccgccaaggccaagaccatcgagaagtatctgggg
ccgggccaccgcgtcctggcatcctatggccatgtccgcgacctgcccgccaaggacgga
tcggtgaaccccgacgagggcttcgcgatggagtgggaggcctatgcggacaaggccaag
cagctcaagatgatcgcggacgaggccaagacggccgataccctcatcctcgcgaccgat
cccgatcgcgagggcgaggcgatcagctggcatgttcaggaggtgctgcggaagcgcaag
gcgttgcccaaggacgtgcagcgcgtcaccttcaacgcgatcaccaagcccgccgtgctg
gaggcgatggccaatccccgcgcgctggacgaggatctgatcgacgcctaccgcgcccgc
cgcgcgctcgactatctcgtcggcttcaccctctcgccggtgctgtggcgcaagctgccg
ggcgccaagtcggcgggccgggtgcaatcggtgtcgctgcgcctgatcgtcgatcgcgag
cgcgagatcgaactcttccggccccaggaatattggtccgtcgccgccgcgatggagcat
gacggcgtgcccttcaccgcgcgactggtgcgctggcgcggcgacaagatcgaccggctg
acgatcggcaacggtggcgacgccgagcaggccaagaaggatgtcgaggccgggcgcttc
accgtcgtctcggtcgagaccaagccgctcacccgcaatccgccgccgcccttcaccacc
tccacgcttcagcaggaggcggcgcgcaagctcggcttctcggccagccacacgatgcgg
gtcgcgcagaatctctacgaggatggcgcgatcacctacatgcggacggacggcgtgcag
atggatggcggcgcaatttcggaggcccgccgtgccatcgccgatcgctatgacgcgggc
tatgtgccagacaagccgcgccagtatcagaccaaggcgaagaacgcgcaggaggcccat
gaggcgatccgccccaccgattttgcgcgcgacaaggccggcaccggcgatcatgcccgc
ctctacgaactgatcttcaagcgtgcgctcgccagccagatggcctcggcgcggctggag
cggaccgtggcggagatgaccgacggcaccgggcaacatgccctgcgcgccaccggccag
gtcgtgatcttcccgggctatctcgcgctctacgaagagggccgcgacgacgaggcggac
gaggacgccaagcgcctgccgcgcctcaccgaaggcggcgtgcccgccaagaagtcggtc
accgccgagcagcatttcacccagccgccgccgcgctattcggaggcgagcctcgtcaag
aagatggaggaactcggcatcggccgcccctccacctacgcctcgatcctccagaccttg
aaggatcgcgactatgtgacgctcgagaagaaccgcttcattcccaatgagagcgggcgt
ctcgtcacgtccttcctcgagcggttcttcgaacgctacgtcagctacgattataccgcg
ggcctcgaggaccagctcgacgacgtgtcgggcggtcgcgccggctggcaggcggtgctc
gaggccttctggcgcgatttcaagcccaagaccgccgaggtgatggagcagaagccgtcc
gaagtgacggccgcgctcgacgaattcctcgcgccctatctcttccccgacaagggcgac
ggcagcgatccgcgcgcctgcccggcctgcgccgatggcagactggcgttgcgcggcggc
cgcttcggcgcgttcgtcgcctgctccaattatcccgagtgcaaatatacccgccgcttc
gcgcagggcggtggcgagggggcggccgccgataccggcccggccgatctcggcaccgat
ccggcgagcggcgaggcggtgaccaagcggtcgggccgcttcggcacttatgtccagctg
ggcgacggcaaggacgccaagcgctcgtccatcccgaaggacgtgcccgaggccgatctc
gatctgccgatggcgctcaagctgctgtcgctgccgcgcacgatcggcgcgcatcccgaa
agcggcaatccgatcaccgcctcgatcggccgctacggcccctatctggcgcatgacggc
aaatatgcgcggctcacctccaccgccgaagtgttcgagacgggcatgaacgcggcggtg
gtcaagctggccgaggcggcggcgggcggcgggcgcccgcagcgcggcgcggcgcgcgag
cccctgaaggcgttcggcgatagcccggtgacgggcaagccggtgcgcctgctggaaggg
cgcttcggcccctacgtcaccgacggcgagaccaacgcgaccctgcccaaatcggccgac
ccgcaggcgctgaccgaggaagccgcgctgctcctgctcgccgagcgcgcggccaagggc
ggcccgaccaaggccaagaagaagcccgccgcgaagaaggccgccccggcgaagaaggcc
ccggccaagaaggcccccgcgaaggcgaaggcctga
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