Sphingomonas naphthae: PQ455_17070
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Entry
PQ455_17070 CDS
T08850
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
snap
Sphingomonas naphthae
Pathway
snap03030
DNA replication
snap03410
Base excision repair
snap03420
Nucleotide excision repair
snap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ455_17070 (polA)
03410 Base excision repair
PQ455_17070 (polA)
03420 Nucleotide excision repair
PQ455_17070 (polA)
03440 Homologous recombination
PQ455_17070 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snap03032
]
PQ455_17070 (polA)
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_17070 (polA)
Enzymes [BR:
snap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PQ455_17070 (polA)
DNA replication proteins [BR:
snap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PQ455_17070 (polA)
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PQ455_17070 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PQ455_17070 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_5
Taq-exonuc
DNA_polI_exo1
HHH_2
HHH
baeRF_family10
Motif
Other DBs
NCBI-ProteinID:
WCT73304
UniProt:
A0ABY7TM32
LinkDB
All DBs
Position
3536119..3538869
Genome browser
AA seq
916 aa
AA seq
DB search
MAANHLYLVDGSGYIFRAYHRLPPLTNRHGVPAGAVYGFTTMMWKLVDELHRAEGPTHMA
VIFDASSKTFRNDMYDQYKAHRPPPPEDLVPQFPLIRDATRAFSIPCIEEVGLEADDIIA
CYAKAALAAGWKVTIVSSDKDLMQLIEPGLDMLDTMNNRRLGPEHVIEKFGVPPEQLGDV
LALMGDSVDNVPGVPGIGPKTASELVRTYGDVEAVLAAAEQIKKPKLRQSLIDHADNARL
SRELVRLVCDRPLPEPLDDLALKGLPPEPLRAFLEDMGFRSLLAKLGGPQPAAAPAASID
EEVDPPFVHKDYETVVDEAALDRWIAAAYAATQIAVDTETDGIDCVRAKLVGISLATAPG
KACYIPLGHGLAGDDLLAEPPTQLPAELVLAKLKPLLEDPSILKIGQNLKYDLIMFRRHG
VDVTPYDDTMLLSYDLDAGLGGHGMDDLAKRHLDHACIEFKTVCGTGKTQISFDKVALPQ
ATEYAAEDADVTLRLWRRLKPRLAREKATRVYELVDRPLVPVIAEMERAGILVDRAELAR
LSAEFGGEIQRLEGVIHEAAGGPFTIGSPKQLGEVLFERLGLKGGRKGKSGVYSTDVNEM
ERLAGEGVAVARLVLEWRQLSKLKATYTDALQAQINPETGRVHTSFGLATAQTGRLSSTD
PNLQNIPIRTETGRRIRDAFVAAPGNVLLSADYSQIELRLAAHMADVPALQQAFARGDDI
HNLTAQELFGEVNRDTRGRAKTINFAILYGISSWGLAGRLGVDRGEAQAMIDRYFERFPG
INRYIADTLAELREHGYVTTLFGRKTHLPGIKAKTVGERQAAERQAINAPIQGTSADIIK
RAMVRMGPALAAAGLGHVRMLLQVHDELVFEAPEADAPAAAEVIRETMARAAEPAVTLSV
PLGVEVGIGKSWGAAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaccacctctatctcgtcgatggctcgggctatatcttccgcgcctatcat
cgcctccccccgctcaccaatcgccacggcgtgccggcgggcgcggtctatggcttcacc
acgatgatgtggaagctggtcgacgaactgcatcgcgccgaggggccaacgcatatggcg
gtgatcttcgatgcctcgtcgaagacgttccgcaacgatatgtacgatcagtataaggcg
caccgcccgccgccgccggaggatctggtcccgcaattcccgctgatccgcgacgcgacg
cgcgctttctcgatcccctgcatcgaggaggtcgggctggaggccgacgatatcatcgcc
tgctatgccaaggcggcgctggcggcggggtggaaggtcacgatcgtctcgtccgacaag
gatctgatgcagctcatcgaaccgggcctcgacatgctcgatacgatgaacaaccgccgc
ctcggccccgagcatgtgatcgagaagttcggcgtgccacccgagcaattgggcgacgtg
ctggcgctgatgggcgacagtgtcgacaacgtccccggcgtgcccggcatcggccccaag
acggcgagcgagctggtccgcacctatggcgatgtcgaggcggtgctggcggcggccgag
cagatcaagaagcccaagctgcgccagtcgctgatcgaccatgccgacaatgcccgcctc
agccgtgagctggtgcggctggtgtgcgaccggcccctgcccgagccgctcgacgatctg
gcgctgaagggcctgccgcccgagccgctgcgcgccttcctggaggacatgggcttccgc
tcgctgctggcgaagctgggcgggccgcagccggccgccgcgcccgccgccagcatcgac
gaggaggtcgatccgcccttcgtccacaaggattacgagacggtggtcgacgaggcggcg
ctcgatcgctggatcgcggcggcctatgcggccacgcagatcgcggtggataccgagacc
gacgggatcgattgcgtgcgggcgaagctggtcggcatcagcctggcgaccgcgccgggc
aaggcctgctacatcccgctcggccacgggctggcgggcgacgacctgctcgccgagccg
ccgacgcagctgcccgccgagctggtgctggcgaaactgaagccgctgctggaggatccg
tcgatcctcaagatcggccagaatctgaaatacgacctcatcatgttccgccgccacggc
gtcgacgtgacgccctatgacgatacgatgctgctgtcctacgatctggacgcggggctt
ggcgggcatggcatggacgatctggccaagcgccacctcgatcatgcctgcatcgaattc
aagacggtgtgcggcaccggcaagacgcagatcagcttcgacaaggtcgcgctgccacaa
gccaccgaatatgccgccgaggatgccgacgtcaccttgcggttgtggcgccggctgaag
ccgcgtctggcgcgcgagaaggcgacgcgggtctatgagctggtcgatcggccgctggtg
ccggtgatcgccgagatggagcgcgccggcatcctcgtcgatcgcgccgagctggcgcgg
ctgtcggccgaattcggtggcgagatccagcggctcgaaggcgtgatccacgaggcggcg
ggcggcccgttcacgatcggcagccccaagcaattgggcgaggtgctgttcgagcggctg
ggcctgaagggcgggcgcaagggcaagagcggcgtctattcgaccgacgtgaacgagatg
gagcggctggcgggcgagggcgtggccgtcgcgcggctggtgctggaatggcgccagctc
tccaagctgaaggcgacctataccgacgcgcttcaggcgcagatcaacccggagacgggc
cgggtgcacaccagcttcgggctggcgacggcgcagaccgggcggctttcctcgaccgac
ccgaacctccagaacatcccgatccgcaccgagaccggccgccgcatccgtgatgccttc
gtagccgcgcccggcaacgtgctgctctcggccgattattctcagatcgaattgcggctg
gcggcgcacatggcggacgttcccgcgctccagcaggcgttcgcgcgcggcgacgacatc
cataatctgaccgcgcaggaattgttcggcgaggtcaatcgcgacacgcgcgggcgcgcc
aagacgatcaacttcgccatcctctacggcatctcctcctggggtctggcggggcggctg
ggggtcgatcgcggcgaggcgcaggcgatgatcgaccgctatttcgagcggttccccggc
atcaaccgctatatcgccgacacgctcgccgagctgcgcgagcatggctatgtgaccacg
ctgtttggccgcaagacgcatcttcccggtatcaaggccaagacggtgggtgagcggcag
gcggctgagcggcaggcgatcaacgcgccgatccagggcaccagcgcggatatcatcaag
cgggcgatggtgcggatggggccggcgctggcggcggcgggcctcggccatgtccgcatg
ctgcttcaggtgcatgacgaactggtgttcgaggcgcccgaggccgatgcgcccgcggcc
gccgaggtgatccgcgagacgatggcgcgcgccgccgagccggcggtcacgctcagcgtg
ccgctgggcgtcgaagtcggcatcggcaagagctggggcgccgcgcattga
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