Sphingomonas naphthae: PQ455_18615
Help
Entry
PQ455_18615 CDS
T08850
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
snap
Sphingomonas naphthae
Pathway
snap02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PQ455_18615 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snap03021
]
PQ455_18615 (rpoD)
Transcription machinery [BR:
snap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PQ455_18615 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Disulph_isomer
HTH_20
Motif
Other DBs
NCBI-ProteinID:
WCT73594
UniProt:
A0ABY7TKA4
LinkDB
All DBs
Position
3858337..3860388
Genome browser
AA seq
683 aa
AA seq
DB search
MAKTITAGASGGGGEGGDGGDAPLIDLNDASIKKVFARAKKRGYITIDQLNEALPQDQMS
SDQLEDIMSALNEMGVNIVENEDAGEDGESQDADDSADEAQPEDDGTAPQQLTNVTKKET
IDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFNAIIDWSTA
LNEGTMQLREILDLDAMVSKGPSAEQVAEAEEDDGTGEISAATAGPAFKEEAEPEEASVD
EEDEDGVERRAPRPSDDEDEDNTLSLAQMEEQLKPIALERFATITSLYKKFSKLQAVRIE
TLGVGDDFPVGDENKYQKLREELTAEVESVQFHGAKIEYLVDQLYAFNRRLTALGGQMLR
LAERHKVNRKDFLDRYVGHELEEGWLDTVAKLDKKWTAFATNEVDAVDRIRAEIGEIAQA
TGMALTEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQI
LHEIGREPTPEELAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVI
PVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQI
EAKALRKLKHPSRSRKMRSFLDQ
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaccattacggcaggggcgagcggcggcggcggcgaaggaggcgacgggggc
gatgcgccgctgatcgacctgaatgacgcgtcgatcaagaaggtcttcgcgcgcgccaag
aagcgcggctacatcacgatcgaccagctcaacgaggcgctgccgcaggaccagatgtcc
tccgaccagctcgaggacatcatgtccgccctgaacgagatgggcgtcaacatcgtcgag
aacgaggatgccggcgaggacggcgaatcgcaggacgccgacgattccgccgacgaggcc
cagcccgaggacgacggcaccgcgccgcagcagctgacgaacgtcaccaagaaggagacg
atcgaccgcaccgacgatccggtgcggatgtacctgcgcgagatgggcgcggtcgagctg
ctcagccgcgagggcgagatcgccatcgccaagcgcatcgaggccggccgcgacacgatg
atcatgggcctgtgcgaaagcccgatcaccttcaacgccatcatcgactggtcgaccgcg
ctcaacgagggcacgatgcagctgcgcgagatcctcgatctcgacgcgatggtctccaag
ggtccgtcggccgagcaggtcgccgaggccgaggaggatgacggcaccggcgagatatcc
gccgccaccgccggccccgccttcaaggaagaggccgagcccgaagaggcgtcggtcgac
gaagaggacgaggatggcgtcgagcgccgcgcgccgcgcccgtccgacgacgaggacgag
gacaataccctcagcctcgcgcagatggaggagcagctcaagccgatcgcgctggagcgg
ttcgccacgatcacctcgctctacaagaaattctccaagctccaggccgtccgcatcgag
acgctgggcgtgggcgacgattttcccgtcggcgacgagaacaaatatcagaagctgcgc
gaggagctgacggccgaggtcgagagcgtccagttccatggcgccaagatcgaatatctg
gtcgatcagctctatgccttcaaccggcgcctgaccgcgctcggcgggcagatgctgcgt
ctggccgagcgccacaaggtcaaccgcaaggacttcctcgatcgctacgtcggccacgaa
ctggaggagggctggctcgacacggtcgccaagctcgacaagaagtggacggccttcgcc
accaacgaggtggacgcggtcgatcgcatccgcgccgaaatcggcgagatcgcccaggct
acgggcatggcgctcaccgaattccgccgcatcgtcaacatggtgcagaagggcgagcgc
gaggcgcgcatcgccaagaaggagatggtcgaggcgaacctgcgcctcgtgatctccatc
gccaagaaatataccaatcgcggcctgcaattcctggatctcatccaggagggcaatatc
ggcttgatgaaggcggtcgataagttcgaatatcgccgtggctacaaattctcgacctat
gcgacgtggtggatccggcaggcgatcacccgctcgatcgccgatcaggcgcggacgatc
cgcatcccggtccacatgatcgagacgatcaacaagctggtccgcaccagccgccagatc
ctccacgagatcggccgcgagccgaccccggaggaactggccgagcgcctctctatgccg
ctcgagaaggtccgcaaggtgatgaagatcgccaaggagccgatctccctcgaaacgccg
atcggcgacgaggaggacagccatctgggcgacttcatcgaggacaagaatgccgtgatc
ccggtcgatgccgcgatccaggcgaacctcaaggaaaccgtgacgcgggtgctggcgagc
ctgaccccgcgcgaggagcgcgtgctgcggatgcgcttcggcatcggcatgaacaccgat
cacacgctggaggaagtgggccagcagttcagcgtgacccgcgagcgtatccgccagatc
gaggcgaaggcgctccgcaagctgaagcacccgagccgcagccgcaagatgcgcagcttc
ctcgaccaataa
DBGET
integrated database retrieval system
