Candidatus Sneabacter namystus: FZC37_01000
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Entry
FZC37_01000 CDS
T10120
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
snay Candidatus Sneabacter namystus
Pathway
snay02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
snay00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FZC37_01000 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snay03021
]
FZC37_01000 (rpoD)
Transcription machinery [BR:
snay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FZC37_01000 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_ner
Sigma70_r4
Sigma70_r1_2
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
QEK39516
UniProt:
A0A5C0UHM2
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All DBs
Position
complement(234855..236702)
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AA seq
615 aa
AA seq
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MQNNDNEDKIKKTVKYEQKDKEPLRKKSKKSDNDKVDTNQESILKAIDEVAEKPEEAISL
FTTDTGIPVRESGYKAYIPSDDPVRLYFKDMGKVPLLSREGEIAIAMSIECKVKEMLRLA
YSHPVILEVFSKWHNQLLEGTLPIKEIVELDTSNEDEVLGDVVETKDADSTALIEDKLEE
LEEELNDTEDIEQKDTLEEYEETQQNLISVVSQIEQIQSCIVDFEKLISNMLEKNISYAD
ICNDPIYQEKLQDIVDRINNMKLTNKAIDKILHFLYNLNKELISKENKISLLAKKYNISR
NEFLENYSSESDWLNVDLNTNTKWKNFVNQEYAVLSKIQSEIQKLALKLKIPLEDFKNKT
LHIKGSERKIANTKKEMIKANLRLVISIAKKYANKGLSFLDLIQEGNIGLMKAVDKFEYK
RGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSKEMFNELGYEPTATE
IAKKTSLSVEKVHKVLKVGKEPVSLENPVGEQEGSCLSDFIEDKNTLLPTDAAISANLRD
MTTQSLIELTAKEERVLRLRFGIVVDEHTLEEVGSQFKVTRERIRQIEAKALRKLRHPKR
SRKLRSFADGQIIQQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaataatgacaacgaagataaaattaaaaaaactgtaaaatatgagcaaaaagat
aaagaaccattacgcaagaaaagtaaaaaatctgacaacgacaaagtagatacaaatcaa
gaaagcatattaaaagcaatagatgaagtagcagaaaagccagaagaggctatatctctt
tttactacagatacaggaatacctgttagagaatcaggatataaggcgtatataccatca
gacgatccggtaagattgtactttaaagatatgggcaaggtacctctcttatcgagagaa
ggagaaatagctatagcaatgtctatagaatgtaaagttaaagaaatgcttagattggca
tacagccaccctgtaatattagaagtattttccaaatggcataaccaactactagaagga
acgcttccaataaaagagatagtagaactagatacatcaaatgaagatgaagtactaggt
gatgttgtagaaacaaaagatgcagatagcacagcattaatagaagataaactagaagaa
ttagaagaagaattaaatgatacagaagatattgaacaaaaggatacacttgaagaatac
gaagaaacgcaacaaaacctcatctcagtagtatctcaaatagagcaaatacaatcttgc
atagtagattttgagaaacttatatctaatatgctagaaaaaaatataagttatgctgat
atctgtaacgatcctatatatcaagaaaaactacaagatattgtagatcgcataaacaat
atgaaacttaccaacaaagccatagataagattcttcatttcctgtacaacctgaacaaa
gagctaataagcaaagaaaataaaatttctcttttggcaaaaaagtacaacatctcaaga
aatgaatttttagaaaattacagttccgaaagtgattggttaaatgtagatctaaacaca
aatacaaagtggaaaaattttgtgaatcaagaatatgctgttttaagtaaaatacagtca
gaaattcagaaactagccttgaaactcaaaatcccattagaagattttaaaaataaaacc
ttacatattaagggcagtgaaagaaaaatagccaatacaaaaaaggaaatgataaaagca
aatttgagacttgtcatttccatagcaaaaaaatatgcaaacaaaggtcttagcttcttg
gaccttatacaagaaggaaatataggtttgatgaaagcagtagataagttcgaatataaa
agaggatacaaattttctacatatgcaacttggtggataagacaagctataacacgagct
atagcagaccaagcaagaacaatacgtattcccgtacacatgatagaaacaattaacaag
atcctaagaacatctaaagaaatgttcaatgagttaggttacgaaccaacagctacagaa
atagcaaaaaagacatcattatcagtagaaaaagtacacaaagtactaaaagtaggtaaa
gaaccagtaagcttagaaaatccagtaggagaacaagaaggtagctgtcttagtgacttt
atagaggataaaaatactttattacctacagatgcagccatttcagcaaacttaagagat
atgacaactcaatctctaatagaactgacagcaaaagaagaacgagtgctacgattacgc
tttggaatagtagtagacgaacatactctcgaagaagtaggatcgcaattcaaggtgact
agagaaagaatcagacaaatagaagcaaaagccttgagaaagctaagacatcctaaaaga
tccagaaagttaagaagcttcgcagatgggcaaattattcagcagtaa
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