Streptococcus pneumoniae TCH8431/19A (serotype 19A): HMPREF0837_11514
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Entry
HMPREF0837_11514 CDS
T01259
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
snc
Streptococcus pneumoniae TCH8431/19A (serotype 19A)
Pathway
snc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0837_11514 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snc03019
]
HMPREF0837_11514 (rnr)
03016 Transfer RNA biogenesis [BR:
snc03016
]
HMPREF0837_11514 (rnr)
Enzymes [BR:
snc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HMPREF0837_11514 (rnr)
Messenger RNA biogenesis [BR:
snc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0837_11514 (rnr)
Transfer RNA biogenesis [BR:
snc03016
]
Prokaryotic type
tRNA degradation factors
HMPREF0837_11514 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1_RRP5
RNase_II_C_S1
OB_PDCD11
CSD
Motif
Other DBs
NCBI-ProteinID:
ADI69742
LinkDB
All DBs
Position
complement(1394872..1397226)
Genome browser
AA seq
784 aa
AA seq
DB search
MKDRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLSLMERKHQIRFEEDGSLTLEA
KKKHEITLKGIFHAHKNGFGFVSLEGEEDDLFVGKNDVNYAIDGDTVEVVIKKVADRNKG
TAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPALKLEGTEV
LKVFIDKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSEFPEAVVKEAESVPD
APSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGS
ALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDKHGRVVNYTI
TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD
TNEAKILVDKQGKPVDIVLRQRGIAERMIESFMLMANETVAEHFSKLDLPFIYRIHEEPK
AEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYS
EHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEHFEQVIPEIATQSSNR
ERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELPNTVEGLIHITNLPEF
YHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEIDFSFVPSEFDVIEKGLKQSSR
SGRGRGSNRRSDKKEDKRKSGRSNDKRKHSQKDKKKKGKKPFYKEVAKKGAKHGKGRGKG
RRTK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagaataaaagaatatttacaagacaagggaaaggtgactgttaatgatttg
gctcaggctttgggaaaagacagttccaaggattttcgtgagttgattaaaaccttgtcc
ttaatggaaagaaagcaccaaattcgttttgaagaagatggcagtctgaccttggaagcc
aagaaaaaacatgagattaccctcaaggggatttttcatgcccataaaaatggttttggt
tttgtcagcctagaaggggaagaggacgacctttttgtagggaaaaatgatgtcaactat
gctattgatggtgataccgtcgaggtagtgattaagaaagtcgctgaccgcaataaggga
acagcagcagaagccaaaattattgatatcctagaacacagtttgacaacagttgtcggg
caaatcgttctggatcaggaaaagcctaagtatgctggctatattcgttcaaaaaatcag
aaaatcagtcaaccgatttatgttaagaaaccagccctaaagttagaaggaacagaagtt
ctcaaggtctttatcgataaatacccaagcaagaaacatgatttctttgtcgcgagtgtt
ctcgatgtggtgggacactcaacggatgtcggaattgatgttcttgaggtcttggaatca
atggacattgtatccgagtttccagaagctgttgtcaaggaagcagaaagtgtgcctgat
gctccgtctcaaaaggatatggaaggtcgtctggatctaagagatgaaattacctttacc
attgacggtgcggatgccaaggacttggacgatgcagtgcatatcaaggctctgaaaaat
ggcaatctggagcttggggttcacatcgcagatgtttcctattatgtgaccgagggttct
gcccttgacaaggaagcccttaaccgtgcgacttctgtttacgtgacagaccgagtggtg
ccaatgcttccagaacgactatcaaatggcatctgctctctcaatccccaagttgaccgc
ctgacccagtctgctattatggagattgataaacatggtcgtgtggtcaactataccatt
acacaaacagttatcaagaccagttttcgtatgacctatagcgatgtcaatgatatccta
gctggcgatgaagaaaagagaaaagaataccataaaattgtaccaagtatcgaactcatg
gccaagcttcatgaaactttagaaaacatgcgtgtgaaacgtggagctctcaattttgat
accaatgaagcgaagattttagtggataaacaaggtaagcctgttgatatcgttcttcgg
cagcgtggcattgccgagcggatgattgagtcttttatgttgatggctaatgaaacagtt
gccgaacatttcagcaagttggatttgccttttatctaccgaattcacgaggagcctaag
gctgaaaaggttcagaagtttattgattatgcttcgagttttggcttgcgcatttatggg
actgccagtgagattagccaggaggcacttcaagacatcatgcgtgctgttgagggagaa
ccttatgcagatgtattgtccatgatgcttcttcgctctatgcagcaggctcgttattcg
gagcacaatcacggccactatggactagctgctgactattatactcactttaccagtcca
attcgtcgttatccagaccttcttgttcaccgtatgattcgggattacggccgttctaag
gaaatagcagagcattttgaacaagtgattccagagattgcgacccagtcttccaaccgt
gaacgtcgtgccatagaagctgagcgtgaagtcgaagccatgaaaaaggctgagtatatg
gaagaatacgtgggtgaagagtatgatgcagttgtatcaagtattgtcaaattcggtctc
tttgtcgaattgccaaacacagttgaaggcttgattcacatcactaatctacctgaattt
tatcatttcaatgagcgtgatttgactcttcgtggagaaaaatcaggtatcactttccga
gtgggtcagcagatccgtatccgtgttgaaagagcggataaaatgactggagagattgat
ttttcattcgtacctagtgagtttgatgtgattgaaaaaggcttgaaacagtctagtcgt
agtggcagagggcgtggttcaaatcgtcgttcggataagaaggaagacaagagaaaatca
ggacgctcaaatgataagcgtaaacattcacaaaaagacaagaagaaaaaaggaaagaaa
cctttttacaaggaagtagctaagaaaggagccaagcatggcaaagggcgagggaaaggt
cgtcgcacaaaataa
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