Streptococcus pneumoniae TCH8431/19A (serotype 19A): HMPREF0837_12229
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Entry
HMPREF0837_12229 CDS
T01259
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
snc
Streptococcus pneumoniae TCH8431/19A (serotype 19A)
Pathway
snc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0837_12229 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snc03021
]
HMPREF0837_12229 (rpoC)
03400 DNA repair and recombination proteins [BR:
snc03400
]
HMPREF0837_12229 (rpoC)
Enzymes [BR:
snc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0837_12229 (rpoC)
Transcription machinery [BR:
snc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0837_12229 (rpoC)
DNA repair and recombination proteins [BR:
snc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0837_12229 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Dehydratase_LU
Motif
Other DBs
NCBI-ProteinID:
ADI70457
LinkDB
All DBs
Position
complement(2036206..2039856)
Genome browser
AA seq
1216 aa
AA seq
DB search
MQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWECACGKYKRIR
YRGIVCDRCGVEVTRTKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDMSPRALEEVI
YFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGYGSFVAKMGAEAIQDLLKQVDLEKEI
AELKEELKTATGQKRVKAIRRLDVLDAFYKSGNKPEWMILNILPVIPPDLRPMLQLDGGR
FASSDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNGRRGRPITGP
GSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKP
FVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEP
VLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPV
VTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMAYRNGYVHLHSRVGIATDSLNKPW
TEEQRHKVLLTTVGKILFNDIMPEGLPYLQEPNNANLTEGVPAKYFLPLGGDIKEAISNL
ELNPPFKKKNLGNIIAEIFKRFRTTETSALLDRMKNLGYHHSTLAGLTVGIADIPVVDDK
AEIIEESHKRVEQITKQFRRGMITDDERYNAVTAEWRAAREKLEKRLIANQDPKNPIVMM
MDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMTD
TALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRSIAEGKEMIESLEERLNGRYTK
KTVKHPETGAVIIGPNELITEDKAREIVNAGVEEVTIRSVFTCNTRHGVCRHCYGINLAT
GDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEIFEARNPKGE
AVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVVPFTARMRVEVGGQVARGAALTEG
SIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGDKHIEVMVRQMIRKVRVMDPGDTD
LLMGTLMDINDFTDANKDVLIAGGVPATGRPVLMGITKASLETNSFLSAASFQETTRVLT
DAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPHAVNEEEYLNPPVEEEGNEETT
EVVVDTAVETVEETVE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcaccctagcttctccaagtaaagtccgttcatggtcttatggagaagtcaaa
aaacctgaaacaatcaattaccgtaccttgaaaccagaacgtgaaggactctttgatgaa
gtgatctttggtcctacaaaagactgggaatgtgcttgtggtaagtacaaacgcattcgt
tacagaggaattgtttgtgaccgctgtggggttgaagtaacgcgtacgaaagttcgtcgt
gagcgtatgggacatatcgaattgaaagctcctgtatctcacatctggtacttcaagggg
attccaagccgtatgggcttgacccttgatatgagccctcgtgccctcgaggaagttatc
tactttgcggcttatgtggtgattgatcctaaggatacaccacttgagcacaagtctatc
atgacagagcgcgaataccgagagcgcttgcgtgaatatggttatggttcatttgttgcc
aagatgggtgcggaagccatccaagaccttttgaagcaagtagatcttgaaaaagaaatt
gctgaactcaaagaagaattgaaaacagctactggacaaaaacgtgtcaaagccatccgt
cgtttggatgttttggatgccttttacaagtctggaaacaaacctgaatggatgattctt
aacatccttccggttattccaccagatcttcgtccaatgttgcagttggatggtggccgt
tttgcctcatctgacttgaatgacctttaccgccgtgttatcaaccgtaacaaccgtttg
gctcgtttgcttgagttaaatgcaccaggtatcatcgttcaaaatgagaagcgtatgctt
caagaagcagttgacgctttgattgacaatggtcgccgtggtcgtccaatcacaggacca
ggtagccgtccattgaaatcattgagccacatgcttaaaggtaaacaaggacgcttccgt
caaaacttgctcggtaaacgtgttgacttttcaggacgttccgttatcgctgttggtcca
actcttaagatgtaccaatgtggtgtgccacgtgaaatggcgattgaactctttaaacca
tttgtcatgcgtgaaatcgttgcccgtgatatcgtgcaaaacgtcaaagcagctaaacgc
ttggtggaacgcggagatgagcgtatctgggatatccttgaagaagtgattaaagaacac
ccagtgcttttgaaccgcgcaccgacccttcaccgtttgggtatccaagccttcgagcca
gtcttgattgatggtaaggctcttcgcttgcacccacttgtctgtgaagcctacaatgct
gactttgacggggaccaaatggccatccacgtaccactttcagaagaagcacaagcagaa
gctcgtatcctcatgctagctgctgagcacatcttgaacccgaaagatgggaaaccggta
gttactccatctcaggacatggttttgggtaactactacttgaccatggaagaagctggt
cgcgaaggtgaaggaatggtcttcaaagaccgtgacgaagcggttatggcttaccgcaat
ggctatgttcacctccactcacgtgttggtatcgcaacagacagcctcaacaagccttgg
acagaagagcaaagacataaggtcttgcttacaacagttggtaaaattctcttcaacgat
atcatgccagaggggctaccatacttgcaagaaccaaacaatgccaacttgacagaaggt
gttccagctaaatacttcttgccacttggtggagatatcaaggaagctatcagcaatctt
gagctcaaccctccattcaagaaaaaaaaccttggaaatatcatcgctgaaatcttcaaa
cgtttccgtacgacagaaacttctgccctacttgaccgcatgaagaatctcggttaccac
cactcaactcttgcaggattgacagtgggtattgccgacatcccagtcgttgatgacaag
gctgaaatcattgaagaatcacacaaacgtgtcgaacaaatcaccaaacaattccgtcgt
ggtatgatcacagacgacgagcgttacaatgctgttacagctgaatggcgtgctgcccgt
gaaaaacttgagaaacgcttgattgctaaccaagatcctaagaacccaatcgttatgatg
atggactctggagcccgtggtaacatctcaaacttctcacagcttgccggtatgcgtggt
ctgatggctgctccgaatggacgtatcatggaattgccaattctttcaaacttccgcgaa
ggtttgtcggtattggaaatgttcttctcaactcacggtgctcgtaaaggtatgaccgat
acggcccttaagacagccgactcaggttacttgactcgtcgtttggtcgacgttgcccaa
gacgttatcatccgtgaggacgactgtggaactgaccgtggtctcttgatccgttctatc
gcagaaggaaaagagatgatcgagtctctcgaagagcgtctcaacggtcgttacactaag
aaaactgttaaacatccagaaactggtgcagtgattattggtccaaatgaattgattaca
gaagacaaggcgcgtgaaattgtcaatgctggtgtggaagaagtgactatccgttctgta
tttacatgtaacactcgtcacggtgtctgccgtcactgttatggtatcaacttggcgact
ggtgatgcggttgaagttggtgaagcagttggtacaatcgctgcccaatctatcggggaa
cctggtacacagcttacaatgcgtaccttccacacaggtggggttgcctcaaataccgat
atcactcagggtcttcctcgtgtccaagaaatctttgaagcccgcaatcctaaaggggaa
gcggttataacagaggttaaaggacaagttactgctatcgaagaagatgcatcaactcgt
accaagaaagtctttgttaagggtgaaactggcgaaggtgaatatgtcgttccatttaca
gctcgtatgcgtgtcgaagttgggggccaagtagcgcgtggtgctgctctgacagaaggt
tctatccaaccaaaacgtctccttgcagttcgtgatgtcttgtcagttgaaacgtacctt
ctcggtgaagtacaaaaagtttaccgtagccaaggggtagaaatcggtgacaaacacatc
gaggtaatggttcgtcaaatgatccgtaaagtccgtgtcatggatccaggtgatacagat
cttctcatgggtaccctcatggatatcaatgactttacagatgccaacaaagatgtcctt
atcgcaggtggagttccagcgacaggtcgcccagtccttatgggaattaccaaagcctca
cttgaaacaaacagtttcttgtcagcggcttccttccaggaaacaactcgtgtccttact
gacgcagctatccgtggtaagaaagaccatctccttggacttaaagaaaatgttatcatc
ggtaagatcatcccagctggtactggtatggcccgttaccgtaaccttgaaccacatgct
gtcaacgaagaagaataccttaatcctccagtagaggaagaaggaaatgaagaaacaaca
gaagtagttgtggatactgccgttgaaactgtggaagaaacagtagaataa
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integrated database retrieval system
