Streptococcus pneumoniae ST556 (serotype 19F): MYY_1516
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Entry
MYY_1516 CDS
T02087
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
snd
Streptococcus pneumoniae ST556 (serotype 19F)
Pathway
snd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYY_1516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snd03019
]
MYY_1516
03009 Ribosome biogenesis [BR:
snd03009
]
MYY_1516
Enzymes [BR:
snd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYY_1516
Messenger RNA biogenesis [BR:
snd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYY_1516
Ribosome biogenesis [BR:
snd03009
]
Prokaryotic type
rRNA helicases
MYY_1516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF6363
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFC95173
LinkDB
All DBs
Position
complement(1490834..1492408)
Genome browser
AA seq
524 aa
AA seq
DB search
MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLF
SATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPE
LAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKK
RMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFGKDARKLAAEFTPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKAKGGRGGRRGDDRRERDRRGNGRRD
EFKKGSRGNDRFDKEKRYRKDNKKPRNTLNEKQTGFVIRNKGDK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaattaaacttgtctgctgatttgctagcagaaattgaaaaagctggt
tttgtagaagctagtcctatccaagaacaaactattcctttggcccttgaaggcaaggat
gttatcggtcaagctcagactggtacaggaaaaactgcagcctttggcttgcctaccctt
gaaaaaatccgtacagaagaagcgactatccaagctttggtcatcgctccaactcgtgaa
ctagctgtccaaagtcaagaagaactcttccgctttggtcgtagtaagggagtcaaagtc
cgttcagtatatggcggatcaagcattgaaaaacaaattaaggctcttaaatctggtgcc
catatcgtggtgggaactccaggtcgcctcttggacttgattaaacgcaaggccttgaaa
ttacaagacattgaaacccttatccttgacgaagcggatgaaatgcttaacatgggcttc
cttgaagacatcgaagccattatttcccgtgtacctgagaaccgtcaaactttgcttttc
tcagcaactatgccagatgccatcaaacgtatcggtgttcagtttatgaaagcccctgaa
catgtcaagattgcggctaaggaattgacaacagaattggttgaccagtactatatccgt
gttaaggaacaagaaaaatttgacaccatgactcgtctcatggatgtggcacaaccagaa
ctcgctattgtatttggtcgtaccaaacgccgtgtggatgaattgactcgtggtttgaaa
attcgtggcttccgtgcagaaggaattcatggcgacctagaccaaaacaaacgtcttcgt
gtccttcgtgactttaaaaatggcaatcttgatgttttggttgcgacagacgttgcagcg
cgtggtttggatatttcaggtgtgacccatgtctacaactacgatattccacaagatcct
gagagttatgttcaccgtatcggtcgtacaggtcgtgctggtaagtcaggtcaatctatt
acttttgttgctccaaacgaaatgggttaccttcaaatcattgaaaacttgactaagaaa
cgcatgaaaggtctcaaacctgcaagtgtagaagaatccttccaatcaaaaaaacaggta
gctctcaagaaaatcgaacgtgattttgcagatgaaaccattcgtgccaactttgagaaa
tttggtaaggatgctcgcaaattggctgctgagtttactccagaagaattggcaatgtat
atcttgagtctgacagtccaagacccagatagccttccagaagtggagattgcacgtgaa
aaaccactaccgtttaaaccatcaggtaatggtttcggtggtaaagctaagggaggtcgt
ggaggccgtcgtggggatgaccgtcgagagcgtgatcgccgtggcaatggtcgccgtgat
gagttcaaaaaaggaagtcgtggcaacgatcgttttgataaggaaaaacgttaccgtaag
gataataaaaaaccacgcaatactttaaacgaaaagcaaacaggctttgttattcgtaac
aaaggtgataaataa
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