Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage): SPN23F19810
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Entry
SPN23F19810 CDS
T00843
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sne
Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)
Pathway
sne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPN23F19810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sne03021
]
SPN23F19810 (rpoC)
03400 DNA repair and recombination proteins [BR:
sne03400
]
SPN23F19810 (rpoC)
Enzymes [BR:
sne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPN23F19810 (rpoC)
Transcription machinery [BR:
sne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPN23F19810 (rpoC)
DNA repair and recombination proteins [BR:
sne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPN23F19810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Dehydratase_LU
Motif
Other DBs
NCBI-ProteinID:
CAR69732
UniProt:
B8ZNW6
LinkDB
All DBs
Position
complement(1920279..1923956)
Genome browser
AA seq
1225 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYRGIVCDRCGVEVTRTKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGYGSFVAKMGAEAIQDLL
KQVDLEKEIAELKEELKTATGQKRVKAIRRLDVLDAFYKSGNKPEWMILNILPVIPPDLR
PMLQLDGGRFASSDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMAYRNGYVHLHSRVGI
ATDSLNKPWTEEQRHKVLLTTVGKILFNDIMPEGLPYLQEPNNANLTEGVPAKYFLPLGG
AIKEAISNLELNPPFKKKNLGNIIAEIFKRFRTTETSALLDRMKNLGYHHSTLAGLTVGI
ADIPVVDDKAEIIEESHKRVEQITKQFRRGMITDDERYNAVTAEWRAAREKLEKRLIANQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRSIAEGKEMIESLE
ERLNGRYTKKTVKHPETGAVIIGPNELITEDKAREIVNAGVEEVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVVPFTARMRVEVGGQV
ARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RVMDPGDTDLLMGTLMDINDFTDANKDVLIAGGVPATGRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPHAVNEEEYLNPPV
EEEGNEETTEVVVDTAVETVEETVE
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatgtaaatcgttttaaaagtatgcaaatcaccctagcttctccaagtaaagtc
cgttcatggtcttatggagaagtcaaaaaacctgaaacaatcaattatcgtaccttgaaa
ccagaacgtgaaggactctttgatgaagtgatctttggtcctacaaaagactgggaatgt
gcttgtggtaagtacaaacgcattcgttacagaggaattgtttgtgaccgctgtggggtt
gaagtaacgcgtacgaaagttcgtcgtgagcgtatgggacatatcgaattgaaagctcct
gtatctcacatctggtacttcaaggggattccaagccgtatgggcttgacccttgatatg
agccctcgtgccctcgaggaagttatctactttgcggcttatgtggtgattgatcctaag
gatacaccacttgagcacaagtctatcatgacagagcgcgaataccgagagcgcttgcgc
gaatatggttatggttcatttgttgctaagatgggtgcggaagccatccaagaccttttg
aagcaagtagatcttgaaaaagaaattgctgaactcaaagaagaattgaaaactgctact
ggacaaaaacgtgtcaaagccatccgtcgtttggatgttttggatgccttttacaagtct
ggaaacaaacctgaatggatgattcttaacatccttccggttatcccaccagatcttcgt
ccaatgttgcagttggatggtggccgttttgcctcatctgacttgaatgacctttaccgc
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgagttaaatgcaccaggtatc
atcgttcaaaatgagaagcgtatgcttcaagaagcagttgacgctttgattgacaatggt
cgtcgtggtcgtccaatcacaggaccaggtagccgtccattgaaatcattgagccacatg
cttaaaggtaaacaaggacgcttccgtcaaaacttgctcggtaaacgtgttgacttctca
ggacgttccgttatcgccgttggtccaactcttaagatgtaccaatgtggtgtgccacgt
gaaatggcgattgaactctttaaaccatttgtcatgcgtgaaatcgttgcccgtgatatc
gtgcaaaacgtcaaagcagctaaacgcttggtggaacgcggagatgagcgtatctgggat
atccttgaagaagtgattaaagaacacccagtgcttttgaaccgcgcaccgacccttcac
cgtttgggtatccaagccttcgagccagtcttgattgatggtaaggctcttcgcttgcac
ccacttgtctgtgaagcctacaatgctgactttgacggggaccaaatggccatccacgta
ccactttcagaagaagcacaagcagaagctcgtatcctcatgctagctgctgagcacatc
ttgaacccgaaagatgggaaaccggtagttactccatctcaggacatggttttgggtaac
tactacttgaccatggaagaagctggtcgcgaaggtgaaggaatggtcttcaaagaccgt
gacgaagcggttatggcttaccgcaatggttatgttcacctccactcacgtgttggtatc
gcaacagacagcctcaacaagccttggacagaagagcaaagacataaggtcttgcttaca
acagttggtaaaattctcttcaacgatatcatgccagaggggctaccatacttgcaagaa
ccaaacaatgccaacttgacagaaggtgttccagctaaatacttcttgccacttggtgga
gctatcaaggaagctatcagcaatcttgagctcaaccctccattcaagaagaaaaacctc
ggaaatatcatcgctgaaatcttcaaacgtttccgtacgacagaaacttctgccctactt
gaccgcatgaagaacctcggttaccaccactcaactcttgcaggattgacagtgggtatt
gccgatatcccagtcgttgatgacaaggctgaaatcattgaagaatcacacaaacgtgtc
gaacaaatcaccaaacaattccgtcgtggtatgatcacagacgacgagcgttacaatgct
gttacagctgaatggcgtgctgcccgtgaaaaacttgagaaacgcttgattgctaatcaa
gatcctaagaacccaatcgttatgatgatggactctggagcccgtggtaacatctcaaac
ttctcacagcttgccggtatgcgtggtctgatggctgctccgaatggacgtatcatggaa
ttgccaatcctttcaaacttccgcgaaggtttgtcggtattggaaatgttcttctcaact
cacggtgctcgtaaaggtatgaccgatacggcccttaagacagccgactcaggttacttg
actcgtcgtttggtcgacgttgcccaagacgttatcatccgtgaggacgactgtggaact
gaccgtggtctcttgatccgttctatcgcagaaggaaaagagatgatcgagtctctcgaa
gagcgtctcaacggtcgttacactaagaaaactgttaaacatccagaaactggtgcagtg
attattggtccaaatgaattgattacagaagacaaggcgcgtgaaattgtcaatgctggt
gtggaagaagtgactatccgttctgtatttacatgtaacactcgtcacggtgtctgccgt
cactgttacggtatcaacttggcgactggtgatgcggttgaagttggtgaagcagttggt
acaatcgctgcccaatctatcggggaacctggtacacagcttacaatgcgtaccttccac
acaggtggggttgcctcaaataccgatatcactcagggtcttcctcgtgtccaagaaatc
tttgaagcccgcaatcctaaaggggaagcggttattacagaggttaaaggacaagttact
gctatcgaagaagatgcatcaactcgtaccaagaaagtctttgttaagggtgaaactggc
gaaggtgaatatgtcgttccatttacagctcgtatgcgtgtcgaagttgggggccaagta
gcgcgtggtgctgctctgacagaaggttctatccaaccaaaacgtctccttgcagttcgt
gatgtcttgtcagttgaaacgtaccttctcggtgaagtacaaaaagtttaccgtagccaa
ggggtagaaatcggtgacaaacacatcgaggtaatggttcgtcaaatgatccgtaaagtc
cgtgtcatggatccaggtgatacagatcttctcatgggtaccctcatggatatcaatgac
tttacagatgccaacaaagatgtccttatcgcaggtggagttccagcgacaggtcgccca
gtccttatgggaattaccaaagcctcacttgaaacaaacagtttcttgtcagcggcttcc
ttccaggaaacaactcgtgtccttactgacgcagctatccgtggtaagaaagaccatctc
cttggacttaaagaaaatgttatcatcggtaagatcatcccagctggtactggtatggcc
cgttaccgtaaccttgaaccacatgctgtcaacgaagaagaataccttaatcctccagta
gaggaagaaggaaatgaagaaacaacagaagtagttgtggatactgccgttgaaactgtg
gaagaaacagtagaataa
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