Sneathiella marina: NBZ79_04750
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Entry
NBZ79_04750 CDS
T08200
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
snea
Sneathiella marina
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snea03019
]
NBZ79_04750 (hrpB)
Enzymes [BR:
snea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NBZ79_04750 (hrpB)
Messenger RNA biogenesis [BR:
snea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NBZ79_04750 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
CON_HrpB
Flavi_DEAD
AAA_19
nSTAND3
HA2_C
AAA_22
AAA_30
DnaB_C
VirC2
Motif
Other DBs
NCBI-ProteinID:
USG62286
LinkDB
All DBs
Position
980455..982986
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AA seq
843 aa
AA seq
DB search
MKEIFRNSSLPIVGVLDEISDALSTNNLAILQADPGAGKTTFVPLYLLDKFLKRGKKIVM
LEPRRLAARMSAQRMANMIGEEVGETVGYRVRLDSKVSATTRIEVVTEGVLTRRLQADPE
LSQIDLLIFDEFHERSLQTDLGLALSRQIQEVLRDDLSILIMSATLEAEKLSALLGNAPV
ISSKGRQFPIQTHFLAKPTKDRVEVKTARAIDMALAEEAGDILVFLPGVGEINRVQSLVK
KADKPGDFIVFPLYGNLRQQDQNAVLRPSVDGVRKVVLATDIAETSLTIEGIKIVIDAGL
SRSPIFDPNSGMSRLETTRVSRSSADQRRGRAGRLTAGICYRLWTAAEDRSLVEYSPPEI
LTTDLCTLMLELANWGVQDVGELPWMTPPPIGPMAQAVALLISLGALDKNKNITSLGKQI
VRLPLHPRLSTMVIKSAEYSASKLACDIASLLSERDILRRNRDAPSSDIKDRLNLLIGYR
RKKSVSGPGVDDMAIRQIDRASKDLMRRLKQQDGKYDINQAGLLLAFAYPDRIGDLRNRS
QLNYRLSGGRGARLDANDKLLGEPYLVAADVDGKGSDARIYLAAALSYTDIQKAFEPEFE
TRRKVYWDEKKQRIEAVSEKCLGALILQSTRLKDASSEEISAALVAVIRSKGLQLLPWDD
ASRSLVNRVVFARYHEANEQWPDFSNEGLAERLEEWLLPYLVGLMSLSDLQSIDLASILR
NELGYDRAAQLDVFAPPTLKVPSGSHIRLDYSNPQIPVLSVRLQEVFGLREVPKIAKGKV
AVTIHLLSPAHRPLQVTSDLESFWRTTYNEVKKDMKGRYPKHYWPEDPLQAEATSRAKKR
KPD
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagattttccgaaattccagccttcctattgttggcgtgctagatgaaatttct
gatgcgctttctacgaacaatcttgctattttgcaggcagatcctggtgcagggaaaaca
acatttgtgcccctatacttgctggacaagtttctaaagcgcgggaaaaaaattgtaatg
cttgagccgaggcgcttggcagcacgcatgtcagcccagcgaatggcaaacatgattggt
gaggaagtgggtgaaaccgtaggctatcgtgttcggcttgatagtaaggttagcgcgaca
acacgtattgaagtcgtaacggaaggcgttcttacgcggcggttgcaggctgatcctgaa
ttgtctcaaatagatttactgatctttgatgaattccatgaacgcagtctgcaaacggat
ctggggctggccttgtcccggcagattcaggaagtactgcgggatgatttgagcatcctc
atcatgtctgcaacacttgaggccgaaaagttatctgccctccttggaaacgctcccgtg
atttccagtaaggggcgtcaatttccaattcagacacatttcctggcgaagccgacgaaa
gatcgtgtggaagtaaaaacggcgcgggctatcgatatggctttagcggaggaggcgggg
gatattctcgtttttttacccggcgttggggaaataaatcgggtgcaatcgctggtcaag
aaggctgataagccgggtgatttcatcgtttttccgctatatggaaatcttcgtcagcag
gatcagaatgctgtattgcgcccgtcggttgacggcgtgcgaaaggtcgtgctggcaaca
gatattgctgagacaagcttgaccatcgaaggtattaaaattgttatcgatgcaggtctt
tcgagatcccctatatttgaccctaactccgggatgagcagactggaaacaacgcgggtt
tcccgatcttccgcagaccagcgtaggggacgggcaggccggttgacggccggaatttgc
tatcgattatggacggcggctgaagaccgtagtcttgttgagtattcaccgccggaaatt
ctgaccaccgacttatgtacattgatgctcgaacttgccaattggggcgttcaggatgtt
ggagaacttccctggatgacgccacctcccataggccccatggcgcaagccgtcgccttg
ctcatcagtcttggtgcactcgacaagaataaaaacattacctcccttggcaagcagatc
gtccggctgcctttacatccgcgactgtcgacaatggttataaaatctgcggaatattca
gcttccaaactggcatgtgatattgccagcctgttgtcggaacgcgacatcttgcgccgg
aatcgggacgcgccaagttcagacataaaagatcggctgaacttgcttattggttatcgg
cgaaagaaatctgtttctggtccaggcgttgatgatatggccatccggcagatagatcgg
gccagcaaggatttgatgcgccgactgaaacagcaagatggaaaatatgacataaatcaa
gcgggattattgctcgcatttgcctatcccgaccgtattggcgatttgcgaaacaggagt
cagttgaactatcgcttgtccggtggcaggggcgccagacttgatgcaaatgataagctc
ctgggcgagccctatttagtggcagcggatgtggacggtaaaggcagcgatgccaggatt
tatttagcagctgcgttgtcgtatacggacattcaaaaagcatttgagcctgaatttgaa
acgcgtcggaaggtttactgggacgagaagaagcagcgtattgaagcggtgagtgaaaaa
tgccttggagctctgattttacaaagcacccgtctcaaagatgcgtcatctgaagaaatt
tctgctgctcttgtggcggttattcgaagtaaaggtcttcagcttttaccgtgggacgat
gcaagcagatcgctggtcaacagagtagtattcgcgaggtatcacgaggcaaacgaacaa
tggccggatttttcaaatgaagggcttgctgagcgcttggaagaatggctccttccctat
cttgtcggtcttatgagcctgtcggatttgcagtcgattgaccttgcgagcattttgagg
aatgaacttggatatgacagagcggcacagctggacgtatttgcgccgccgacccttaag
gttccaagcggatcacatattcgcctggattactccaatccgcagattccggtcctgtct
gttcgactgcaagaggttttcggccttagagaggtgccaaaaatcgcaaaaggaaaggta
gcagtcacaattcatctgctgtcaccggcacatcgcccgttacaggtgacatcggatctg
gagagtttctggcgaacaacctacaacgaagtcaaaaaagacatgaaaggccgttatcca
aaacattattggccggaggatccgttacaggcagaggcaaccagccgggccaaaaagcgc
aagccagattaa
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