Sneathiella marina: NBZ79_08725
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Entry
NBZ79_08725 CDS
T08200
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
snea
Sneathiella marina
Pathway
snea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBZ79_08725 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snea03019
]
NBZ79_08725 (recQ)
03400 DNA repair and recombination proteins [BR:
snea03400
]
NBZ79_08725 (recQ)
Enzymes [BR:
snea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NBZ79_08725 (recQ)
Messenger RNA biogenesis [BR:
snea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NBZ79_08725 (recQ)
DNA repair and recombination proteins [BR:
snea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NBZ79_08725 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
USG63062
LinkDB
All DBs
Position
complement(1833317..1835122)
Genome browser
AA seq
601 aa
AA seq
DB search
MSLKPLDALTNTFGYPAFRGQQDKVIDHVLAKRDALVLMPTGGGKSLCYQIPALCMDGVA
VVISPLIALMQNQVEALQQLGIAAAALNSSHPREDQDTVKTALLKGELKLLYIAPERLFA
VGFINLLAKCNVSLFAIDEAHCVSQWGHDFRPEYLKLSILAEKFGNVPRLALTATADTPT
EKDIIERLGLQYGKIFRAGFDRPNICYRLTSKSGGTAQLQSFIDSEHSENAGIVYCMSRK
KVEQVATKIAQSGRIALPYHAGLSADIRKETQSRFLKEDAVIIVATIAFGMGIDKPDVRF
VAHLDLPKNMESYYQETGRAGRDGLPADAWLAYGLQDVAKLKALMQNPDKSQQQQNLDHR
KLDSLLQFCESALCRRHLLLKYFGEDAPSSCGNCDNCLTPPSQFDATEAAQMAFSCIYRT
GEMFGAGHVTDILLGSETDKIAKFGHDTLKTYGLGKAWSRADWQSIFRQLLALGMLNIDM
EGYGGLSLHESCRPILKGEKPLQLKKLTIPKKGKARTAKSRRVFASKEEEALFTLLKTVR
LTLAKEQNVPPYVIFHDKTLLEMAQFKPRTLSAFGELSGVGASKKNKYGNQFLQAIGETS
P
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttaaaccgttagacgctcttacaaatacatttgggtaccccgcatttcgaggc
cagcaagacaaggtaattgatcatgtcctggctaagcgagacgcattggttttgatgcct
actggaggtggcaaatcactttgttaccaaattccggccctttgtatggatggcgtcgcg
gttgtcatctctcctcttatcgctttaatgcaaaatcaggttgaggcacttcaacagctg
ggcatcgcagcggcggccctgaattcatcccatccacgtgaggaccaggacaccgtcaag
acggcgttactaaagggtgagctaaaactcttatatattgctccggagagattattcgct
gtgggatttataaacctgctggctaaatgcaacgtttctctttttgccattgatgaagcg
cactgcgtctcgcaatggggccatgattttcgccctgaatatttgaagctgagtatttta
gcggaaaaatttggaaatgtaccaagattggcgctaaccgcaacggcggatactcctaca
gaaaaggatattattgagcggctgggattacaatatgggaagatttttcgggccggattc
gatcgcccaaatatctgttaccgtcttacaagtaaatcagggggaacggcacagctgcaa
tcatttatcgacagcgagcattcggaaaatgccggtattgtttattgtatgtcccgcaaa
aaagtcgaacaagttgcaactaagatagctcaatcgggccgtattgctttaccgtatcat
gctggcctttccgccgatattcgtaaagaaacgcaatcgcggtttttgaaagaagacgcc
gttattattgttgcgacaatcgctttcggaatggggattgataaaccggacgtccgcttc
gtggcgcatctggatcttcccaaaaacatggaatcttattatcaggaaaccggtcgggcc
ggccgggatgggcttcccgcggacgcttggctcgcctatggattgcaagatgtcgcaaaa
ttaaaagctcttatgcaaaatcctgataaaagccaacagcagcagaacctagatcatcga
aaattggattcacttttacaattttgtgaaagcgcactttgtcggcgccatttgcttttg
aagtattttggtgaagatgcgccttccagctgcgggaattgcgataactgcctgacacct
ccgtcccaattcgatgcaactgaagcagcgcaaatggctttttcctgtatataccgcaca
ggtgaaatgtttggtgccggccatgtcacggatattttgttgggatccgaaaccgataaa
attgcgaaatttggccacgacaccctaaaaacatatggtctcggcaaggcctggagccgc
gctgactggcaatctattttcaggcaattgctcgccctgggaatgttaaatattgatatg
gaaggatatggaggtttatcccttcacgaatcctgcaggcccattttaaaaggcgagaaa
cctcttcagctcaagaagttgactattcctaaaaaaggaaaagcacggactgccaaatct
cgacgggtttttgcatcaaaggaagaagaagctcttttcacacttcttaaaaccgtccgc
cttacattggcgaaagagcaaaatgtgccgccatatgttatatttcacgataaaacatta
cttgaaatggcccagttcaaacccagaacattgtctgcttttggggaactatcaggcgtc
ggcgccagtaagaaaaacaaatacggaaatcaatttttacaggcgattggcgaaacttcc
ccttaa
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