Sneathiella marina: NBZ79_08775
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Entry
NBZ79_08775 CDS
T08200
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
snea
Sneathiella marina
Pathway
snea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBZ79_08775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snea03019
]
NBZ79_08775
Enzymes [BR:
snea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NBZ79_08775
Messenger RNA biogenesis [BR:
snea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NBZ79_08775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
USG63072
LinkDB
All DBs
Position
complement(1840591..1841970)
Genome browser
AA seq
459 aa
AA seq
DB search
MTEFTELNLVGPLLRAIEKQGFDAPTAIQSAAIPELLEGGDLMGVAETGGGKTAAFVLPL
LQRLQHERVRPKSGKPTAIILAPTRELASQIGLCIRVFTRGMKLFHTVVYGGAPYGPQLQ
QLSRGVDVLVATPGRLMDHMKRGTVQLDMVQTLILDEADRMLDMGFIDDVNLIVDKLPEE
HQTVMFSATMSPAIKKLSQKLLKNPKYVEAKRQTAVASTIDHSVLMVRQPDKKDLLMHLL
AKGDKERVLVFVRTKATADILAEEIENEVEDIKTAAIHGDLHQRARERTLRSFKNGKFSV
LVATDVAARGIDVNGITHVINYDLPMEPENYIHRVGRTGRAGATGTAISICEPRERNLLR
NVEQIIKQKVRVDDDHPFPAPASVQEKKKHRPGRSGRPSRKPGEKKTSAEVKPFRKRPKK
TVSKNKGKPGFKSDKSENKNANPNFKRSNAKRQKFKRAS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatttacagagctcaaccttgttgggccgcttttgcgtgcgatcgaaaaacag
ggctttgacgccccgacggctattcagtccgccgccataccagaactgcttgaaggcggt
gacctgatgggtgttgcggaaactggtggcggtaaaacagccgcatttgtacttccccta
ttgcaacgcttacaacatgagcgggttcgcccaaaatcgggcaagccaacagcgatcatt
ctcgctccaacgcgtgaacttgccagtcaaatcggcttatgtattcgcgttttcacccga
ggcatgaaattgtttcatacggttgtttatggtggcgcaccatatggtccgcagctgcag
caactatctcgtggcgttgatgtcctagtggccacacccggccgtcttatggaccatatg
aaacgcggcactgttcagctcgatatggttcagactttgattttggatgaagccgatcgc
atgcttgatatgggttttatcgatgatgttaatttgattgtcgataaacttcccgaagaa
catcagacagttatgttctccgcaacaatgagccctgctatcaagaaactgtcacagaaa
ctcctgaagaacccaaaatatgtcgaagccaagcgccagactgctgtcgcctctacaatc
gatcattcggttctcatggtacggcagccagacaaaaaagacctcttgatgcatcttctc
gcaaaaggcgacaaagaacgcgtccttgtgtttgttagaacaaaagcgacagctgacatt
ctggcggaagaaatcgagaatgaagtcgaggacataaaaaccgctgcgatccatggagac
cttcaccaaagagcccgtgagagaacgctccgctccttcaaaaatggaaaattttccgtg
ctggtcgcgacggatgtcgcggcacgcggtattgatgtcaacgggatcacccatgtcatc
aattacgatttacccatggaaccggagaattatatccatcgtgttggccgaaccggtcgt
gctggcgcgacaggtactgcgatttcaatttgcgaacctcgtgaacgcaatcttcttcgc
aatgttgaacaaattatcaagcaaaaggtacgcgtagatgacgaccatcccttccccgcg
ccggcgtcagttcaggaaaagaaaaagcatcgtccaggacggtcaggacgcccatcccgc
aagccgggtgaaaagaaaacttcagcagaagtcaaaccattccgcaaacgcccaaagaaa
accgtcagtaaaaataaaggcaagccgggatttaagtctgataagtccgaaaacaagaat
gcaaatccgaattttaaacgttcaaatgctaaacggcagaaatttaagcgcgccagctag
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