Sneathiella marina: NBZ79_10000
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Entry
NBZ79_10000 CDS
T08200
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snea
Sneathiella marina
Pathway
snea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NBZ79_10000 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snea03400
]
NBZ79_10000 (mfd)
Enzymes [BR:
snea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NBZ79_10000 (mfd)
DNA repair and recombination proteins [BR:
snea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NBZ79_10000 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
MFD_D3
SecA_DEAD
ERCC3_RAD25_C
RecG_dom3_C
DUF7510
Motif
Other DBs
NCBI-ProteinID:
USG59520
LinkDB
All DBs
Position
2099637..2103137
Genome browser
AA seq
1166 aa
AA seq
DB search
MTSPLFSQICSRISELASQKNSFSVESVPEGYDAYLLSKLIESSEKDILYVLREDVRMAS
TEAALKFFNPTVEVVTFPAWDCLPYDRVSPNPEIVAHRMTTLGQMREIDRGPRVFLTTIN
AILQRVPPIEMVVNSLLNIKIGDRVSLPDLTSYLISNGFSRIGTVMEPGEFAVRGGLIDI
FPPGRENPVRLDLFGEKVDSIRTFDALSQRSTEKIVSLEFTAASEFLLNDDAVSRFRTEY
RSHFGTVTQEDPLYEAVSEKRRHAGMEHWLPLFHEGMATVFDYLPDAQIYLDHLVEEALE
ARLDTISDYFESRRDAAPTMGADYKPLLPNTLYLDAEEWKENIGQKSLCQFTPFRSGTIA
NDVIDANGSLGRDFGPERNLPDTNIYEHVKKHIIEKIGENKLVILTHFSEGSRARNLTVL
ADHGIEPVQKADNFSQIQSGPNIPVLSVLGLEKGFETPELTIIGEQDVLGDRLVRPRKLS
RRNENFIAEASQLSPGDYVVHMDHGIAQYEGLTTIDISGAPHDCVTLLYAGGDKIYLPVE
NIEMLSRYGGSDMSATLDKLGGSGWQARKAKLKKKVMEMADQLIKIAAARQLRKAEKLIP
AEGLYAEFCAGFPFEETDDQLKAIDDTLTDMGTAKAMDRLICGDVGFGKTEVALRAAFTA
AMAGKQVAIVAPTTLLSRQHYKGFVDRFKNLPVNIGQLSRMVTTKEANLTKAGLSAGTVD
IVIGTHALLGNSVKFKNLGLVIVDEEQHFGVVHKERLKEMRADLHVLTLTATPIPRTLQQ
AMTGIRDLSIIATPPVDRLAIRTFVLPFDPVVIREALLREHYRGGQSFFVCPRLSDLKEV
GEYLREHVPEVKYVTAHGQLPAKELDTVMNAFYEGAYDVLVATNIVESGLDIPSANTLIT
YRADMFGLAQLYQIRGRIGRSKTRAYAYLTLPPRKRLTDAAEKRLRVLQSLDTLGAGFTL
ASHDLDIRGAGNLLGDEQSGHIKEVGFELYQQMLEEAVAAARETELGHDVSQADDKWSPS
INIGTSVLIPEHYVADLSLRMELYRRIAAQETAEEINAFAVELVDRFGPLPDEVNHLIEI
MTIKHFCRTANIEKIEAGPKGAVLSFRENNFGNPGGLVAFISKQPGATKIRGDHKLVHTR
DWKHPDDRLKGVLWLAQNLAKIANAA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgcctttgttttcgcagatctgctcccgaatttccgaacttgcttctcagaaa
aacagtttttctgttgaatctgttccggaaggttatgatgcctatttgctgtccaaactc
attgaatcctctgaaaaagatatcctctatgtgttgagagaagatgttcgtatggcttcg
acagaggccgccctcaagttctttaatccaactgtcgaagtcgtcactttcccggcatgg
gattgcctgccatatgaccgggtctctcctaatccggaaattgtcgcgcatcggatgacg
actttggggcaaatgcgagaaattgacaggggtcctcgggtttttctcacgacaatcaat
gcgatcctgcaacgcgtaccgccaattgagatggttgtgaacagccttctgaatattaaa
attggtgatagagtaagcctgccggacttgacatcttacttgatttcaaacgggttctct
cgcatcgggacagtcatggagcccggtgaatttgccgttcgcggtggtttaatcgacatt
tttccgccaggaagagaaaacccggtacgtttggatcttttcggtgaaaaagtggactcc
atcagaacctttgatgccttgtcccagcgttcgacggaaaagattgtatcgcttgaattc
actgccgcatcggagtttttgctaaatgatgacgcggtcagccgttttcgcaccgaatat
cggtcgcattttggtacggttacacaagaagatccattgtatgaagccgtcagtgaaaaa
cggcggcatgcgggcatggaacattggttgccattgtttcatgagggcatggcaactgtt
tttgattatttgccggacgcacagatttatctggatcatttagtcgaggaagccctcgag
gctcgtctggatacaatttcggattatttcgagagtaggagagacgccgcgccaaccatg
ggagcggattataaacctttgctcccaaatactctttatttggatgcggaagaatggaag
gaaaatattggccaaaaaagtttatgccagttcactcctttcagatcaggcacaatagcg
aacgacgttattgacgcaaatggcagtctcgggcgggattttggcccggaacgaaatttg
cctgacaccaatatttatgaacatgtaaaaaagcatattattgaaaagattggggagaac
aaactcgttatccttacgcatttttccgaaggatccagagctagaaatctcacggttctg
gctgaccatggaatagagccggttcaaaaggccgacaatttttctcaaattcagtcgggc
cccaacattccggttttatctgttctcgggttggaaaagggatttgagacacctgaacta
acaatcattggcgagcaggatgtacttggtgatcggctagttcgaccccgcaaactttca
cgccgaaacgaaaattttattgctgaagcctcgcagctttctcccggcgattacgtcgtc
catatggatcatggaattgcacaatatgagggcctgacgacaatcgatatctcaggcgct
ccccatgattgcgtaacgttgctttacgctggcggtgataaaatatacctgcccgtggaa
aatatcgaaatgctgtcgcgttatggcggcagtgatatgtcggcgacgcttgataaactt
ggtggatccgggtggcaggcacgcaaggcaaagttgaagaaaaaagtcatggaaatggct
gatcaattgatcaaaatcgcggcggcacgtcaacttcgtaaagctgagaaactaataccc
gctgaaggattatacgccgaattttgcgccggatttccattcgaggaaaccgatgatcaa
cttaaagcgattgatgataccctgaccgacatggggacagccaaagccatggaccgcctc
atttgcggcgatgttgggtttggaaaaacggaagttgccctgcgggcagcgttcaccgcc
gcaatggccggcaagcaagttgctattgttgcgccgaccacacttttgtcacgacagcat
tacaagggatttgtggacaggttcaagaacctccccgtaaatattggccaattgtcaagg
atggtcacgacaaaagaagcgaacctcaccaaggccggcttgtctgctggaactgtcgac
attgttatcggcactcatgcattgcttggtaattccgtgaagtttaagaatctgggtttg
gtcattgttgacgaagaacagcattttggtgttgtccataaagaacgcctgaaggaaatg
cgggcagacctgcatgtacttaccctgactgccacgccaattcctcgtactcttcaacaa
gcaatgacaggtattcgtgatttatcgattattgcaactcctccggttgaccgtttggca
attcgcacatttgtccttccgtttgacccggtagtaatccgtgaagctttattgagagag
cattatagaggcggccaaagtttttttgtatgcccccgattaagtgatttgaaagaggtt
ggcgaatatctccgcgaacatgtacctgaagtgaaatacgttacggctcacggacaattg
cctgcaaaagagctcgatacagtcatgaacgccttctatgagggtgcttacgacgtactt
gttgccacaaacatcgttgaatccggccttgatataccctccgccaatactttgattacc
tatcgggcggacatgttcggccttgcgcagctctaccaaatcagggggcgtatcgggcgg
tctaaaacacgtgcctatgcctatctaacgcttccgccccgcaaacgattgacggatgcg
gctgaaaaacggctacgcgtattgcaatcgctggataccctgggcgccggatttacactt
gcaagccatgatcttgatattcggggtgccggcaatctactgggagatgaacaatcaggg
catattaaggaagttggctttgaattgtatcagcaaatgctggaagaagcagtggctgcc
gcccgggaaaccgagcttggtcacgatgtcagtcaagctgatgacaaatggtcacccagt
atcaatatcggtacatcggttttgattcccgagcattatgttgctgatcttagcttgcga
atggaattgtatcgacgaattgcagctcaggaaacggcggaggaaattaacgcttttgct
gtcgagcttgtagatcgttttggaccgttgcctgatgaagtcaatcacctgatagaaatc
atgacaatcaaacatttttgtcggacggcaaatattgaaaagattgaagcgggaccaaaa
ggggccgttttgtccttccgtgagaataactttggtaatcccggtggtctggttgccttt
atttcaaagcagcctggagcgacaaaaatcaggggagatcataagctcgtccatacgcgg
gattggaaacacccggacgacaggctcaaaggtgtcttgtggcttgctcaaaacctagcg
aaaattgctaatgccgcttaa
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