Sneathiella marina: NBZ79_10520
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Entry
NBZ79_10520 CDS
T08200
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snea
Sneathiella marina
Pathway
snea03030
DNA replication
snea03430
Mismatch repair
snea03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NBZ79_10520 (dnaE)
03430 Mismatch repair
NBZ79_10520 (dnaE)
03440 Homologous recombination
NBZ79_10520 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snea03032
]
NBZ79_10520 (dnaE)
03400 DNA repair and recombination proteins [BR:
snea03400
]
NBZ79_10520 (dnaE)
Enzymes [BR:
snea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NBZ79_10520 (dnaE)
DNA replication proteins [BR:
snea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NBZ79_10520 (dnaE)
DNA repair and recombination proteins [BR:
snea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NBZ79_10520 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
BMC
Motif
Other DBs
NCBI-ProteinID:
USG59620
LinkDB
All DBs
Position
complement(2207818..2211222)
Genome browser
AA seq
1134 aa
AA seq
DB search
MPVKDIVKLCKTNNMPAAAITDTNNMFGALEFSLAMQAGGVQPILGCQIALTRKDAADRS
GRRPEPDPVVLLAQNETGYHNLLKLTSHAFLKTDAGDTAQVDISVLTRHAEGVICLTGGA
EGPIGRLLANDQIEDAEKYVGNLQDIFDNRLYVEIQRHGLAVERKTEPGFLKLAYEMDIP
LVATNEVFFPNKEMYSAHDALICIADGKYVGDSDRIKRTPEHFFKSQADMASLFEDLPEA
VYNTIVIAQRCAVASKRHDPILPTFSSADGRDEAAELEALANKGLHIRMENEVFTAEMSE
DERAEKSTEYFDRLNYEIGVINEMGFPGYFLIVSDFIQWSKEHNVPVGPGRGSGAGSVVA
WALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDKREKVIRYVQDKYGHQQVAQII
TFGKLQAKAAIRDVGRVLQMPYGQVDRISKMIPANPANPVTLQEALDTEPRLREERAGDP
EVARLIEIALQLEGLYRHASTHAAGVVIGDRELDELVPLYRDPRSDMPVTQFSMKYAEAA
GLVKFDFLGLKTLTVLDRAKDLLAKRGIEIDYAKVPLDDPATFDLLSTGNTIGVFQLESS
GMRDMLRKMRPDAFEDIIAIVALYRPGPMENIPTYIRRKHGEEKPDYLHPQLKSVLEETY
GVIIYQEQVMEIARTLAGYSLGDADLLRRAMGKKIQSEMDEQRSIFAKGAKEKGVTTKDA
SHIFDLVAKFANYGFNKSHAAAYALVSYHTAYLKANYPVEFMAASMSLDLNNTDKLNIFR
QDLDRMKIPVHPPCLNNSEVEFSVEFEGDVGAVRYALAAVKNVGREAMAGIISDRQKNGQ
YKDLFDFSNRLNPRHMNKRQAENLCRAGAFDALSGDRAQVFASIEMLLRQAQQAEQERDS
GQVNLFGGETESVVATPLLPIVSRWTTMEQLKQEFDAVGFYLSGHPLDAWAKTLDKVGVR
NSAAYVASLGVSESAAKLAGTVMGKRELRTRKGKPLAFVQLSDSSGAYEVTMFAETLERS
RELLVVGQSLVLNVTGNLDNEQPRLTVQGIQRLETMAANITDGVRIFVDDDKPIEQLASV
LNEGGKGRGRVAIVLNIEAEAREIEIDLSSHFNISPEVRQALKFVPGVIDVHDI
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
gtgccggtaaaagatattgttaagctgtgcaaaacgaacaatatgcccgccgctgcaata
acggacaccaacaatatgtttggggcattggagttttcactggcaatgcaagcggggggt
gttcagcccattcttggatgccaaatcgctcttacccgaaaggatgcggcagatagatct
ggtcgtagaccagaaccggatccggttgttttgttggcgcaaaacgaaacgggttatcat
aatcttctgaaattaacgtctcatgcttttttgaaaactgatgcgggcgatacagcacaa
gtcgacatttcagtattaaccaggcatgcagaaggcgtcatctgtcttacaggcggtgct
gaaggcccaattgggcggcttctggcaaacgatcaaatcgaagatgccgagaaatatgtt
ggcaacttacaggacatcttcgataaccgcttatacgttgaaattcaacgccacggttta
gccgttgagcggaagacggagccgggttttctgaaattggcctacgaaatggatatcccg
ttagttgcaacaaacgaggtgtttttcccaaataaggaaatgtacagcgcccatgatgca
ttgatatgtattgctgacggaaaatatgtcggtgattcagatcgtatcaaaagaacacct
gaacatttctttaagtcacaggctgatatggcgtccttgttcgaggatttacctgaagct
gtttataacacaattgttattgcacaaagatgtgccgttgcgtcgaaaaggcatgatccc
attctgccgactttttcgtctgcggatggacgcgatgaggcagcggagctggaggccctt
gccaataagggattgcacattcggatggaaaacgaagtttttacagccgaaatgtcggaa
gatgaaagggccgagaagagtacggaatattttgatcgtttgaattacgaaattggtgtc
atcaatgagatggggtttccgggatatttccttattgtttcggactttatccaatggtct
aaggaacataatgtcccggttgggccggggcgtggttcgggtgctggctctgttgtcgca
tgggcacttaccatcactgatcttgaccctttaagatttggattgctgtttgaacggttt
ctaaaccctgaacgggtgtccatgccggattttgatatcgatttctgtcaggacaagcgg
gaaaaagttatccgttatgttcaggataaatacggtcaccagcaagtggctcaaattatc
acattcggaaagttgcaggcgaaagccgctatccgggatgttgggcgtgtcctgcagatg
ccctatggccaggttgacaggattagtaagatgattcctgccaatcctgcaaaccctgtc
acattgcaagaagcattggatacggaaccccgcctgcgtgaagagcgtgctggagatccg
gaagttgcccgcttgatcgaaattgctttgcagctggaaggcttgtaccggcatgcctcc
acgcatgcggcgggcgtggtcattggggatcgggaactggatgagctggtaccgctttat
cgggatccgcgttccgatatgccggtgacacagttttccatgaaatacgcagaagcggcc
ggattggttaagtttgacttcctgggcctgaagacactgaccgtcctggatagggcgaag
gatttgctggccaagcggggtattgaaattgattatgccaaagtcccgctggatgacccg
gcaacctttgatctactttcaaccggaaatacaatcggcgttttccagcttgaaagttcg
ggcatgcgcgacatgctgcgtaaaatgcgccctgacgctttcgaggatatcattgcgatc
gtcgcactctatcgtccgggaccgatggagaacattccaacttatatccgccggaaacat
ggggaagaaaagccggattacttacatccgcagctcaaatccgtattggaagaaacttat
ggtgtcatcatctatcaggaacaggtgatggaaattgccaggaccctggcaggatatagt
cttggcgatgcagatttgctgcgccgggccatgggtaagaaaatccaatccgaaatggat
gagcaacgttctatttttgccaaaggcgcgaaagaaaagggtgtgacgacgaaggatgcc
agtcatatctttgatctcgtggcgaaatttgccaattatggtttcaataaatcccacgca
gcggcctatgcacttgtctcttatcacactgcatatttgaaggcgaattatccggtggaa
ttcatggcggcgtccatgagtctggatttaaacaataccgacaaactgaatatattccgg
caagatctggatcgcatgaagatcccggtgcatcccccttgcctgaataactctgaggtt
gaattttctgtggagtttgaaggcgacgtcggcgcagtgcgttacgctttggcggctgtc
aagaatgttggccgtgaagccatggcgggtattattagtgatcgtcagaaaaacgggcag
tacaaagatctgttcgatttttcgaaccgtcttaacccgagacatatgaataaacgacag
gcagaaaacttatgccgggcaggggcgtttgatgcactgtccggtgatcgggcacaggta
tttgcgtcaatagaaatgctgcttcggcaagcacagcaagcggaacaggaacgagattcc
ggccaagttaatttatttggcggcgagactgaaagcgttgtggcgacaccgttactccca
attgtgtcacgctggaccaccatggaacagttaaagcaggagttcgatgcggttggcttt
tacttatccggtcaccccctggatgcctgggcgaagacattggataaagtaggtgtacga
aattctgcggcatatgttgcaagtttgggcgtttcggaaagtgcggctaagctcgctggc
acagtaatgggaaaacgagaattacgaacccgcaagggcaaacctctcgcttttgttcaa
ttatccgacagcagcggagcttatgaagtaacaatgtttgctgaaacgctggaaagaagc
cgtgaacttttggttgttgggcagtctctggttctgaatgtgacaggtaaccttgataac
gaacaaccgagacttacagttcagggtatccagcggcttgaaacgatggccgccaatata
acagatggtgttcggattttcgtggatgacgataaacccattgaacagcttgcttcagtt
ttaaatgaagggggcaagggacgaggacgcgtggccatagtgctaaatattgaggctgaa
gcacgggagattgaaatcgatctttccagtcactttaatatttctcccgaggtgaggcag
gcattgaaatttgtgccgggagtcattgatgttcatgatatttag
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