Sneathiella marina: NBZ79_13245
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Entry
NBZ79_13245 CDS
T08200
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
snea
Sneathiella marina
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snea03032
]
NBZ79_13245 (topA)
03400 DNA repair and recombination proteins [BR:
snea03400
]
NBZ79_13245 (topA)
Enzymes [BR:
snea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NBZ79_13245 (topA)
DNA replication proteins [BR:
snea03032
]
Prokaryotic type
DNA Topoisomerases
NBZ79_13245 (topA)
DNA repair and recombination proteins [BR:
snea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NBZ79_13245 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
USG60141
LinkDB
All DBs
Position
2760593..2763202
Genome browser
AA seq
869 aa
AA seq
DB search
MNVVVVESPAKAKTINKYLGKDYTVLASYGHIRDLPSKDGSVKPDEDFAMDYQNDSKSAK
HIKAIADALKDADNLYLATDPDREGEAIAWHVMKVMEEKKKLKTAKVSRVVFNEITKRAV
LDGIANPRELDMNLVNAQQARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLICER
ELEINAFVPEEYWSIDADFLTASKDKITARLTYLDNNKLDKFSLPNAESANAAAEKVRAG
AFSVAEVTQKPAKRNPSPPFTTSTLQQEASRKLGFGAKRTMMVAQKLYEGFDIDGETQGL
ITYMRTDGVSLADEAIESARTVIAKEYGSEFVPDKPREYKNKSKNAQEAHEAVRPTDLSR
TPAIAAKYLDQEHARLYELIWKRTIASQMESARLERTTIDFSDGKGQTLRATGSVVRFAG
FLKLYEEGRDDTAADDDGKRLPAIEKGATVDTDIVREDQHFTEPAPRYSEASLVKKLEEL
GIGRPSTYASIISVLQDRDYVRIDQKRFIPEDKGQLVTAFLSSFFTRYVEYDFTAQLEEK
LDDVSDAKIDWKQVLRDFWFDFNLSVEGTSELRVTDVLEELNRVLGPYVFPETEEGKDPR
ACPKCEDGRLSLKTGRFGAFIGCSNYPECRLTRQLGDDTSGADDDTNEGPKEIGLDPATG
LMITLRKGPYGPYLQLGEPEPKKKPKRVSIPKDVPLDSVDFELAVQLMALPREVGLHPES
GTMISAGLGRYGPYVECDKKYGRLTNSMEVLTVGMNRAVELLAAAKPSSGRGRAAPPLRV
VGPHPADEADINVKDGRYGAYVTHGGINATIPKGSDPLTITLEEAVKLLADRAEKSGKKP
KLAKKASAPKKKAAAKKKPAAKKSVADAK
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtagttgttgtcgagtctccagcaaaagccaagactatcaataagtatttggga
aaagattatacagtcctggcttcttatggtcacattcgcgatctgccgtcgaaagatgga
tctgtaaaaccagatgaagacttcgccatggattaccagaatgattcgaaatcggcgaaa
catatcaaagcaattgccgatgcattgaaagacgccgataacctttatcttgcaactgac
ccggatcgtgaaggcgaagccattgcctggcacgtcatgaaggttatggaagagaaaaag
aaactcaaaacggcaaaggtaagtcgcgttgtatttaacgaaataaccaaacgggccgtt
ttggatggcatagccaatccccgtgaactggacatgaacctggtcaacgcacagcaagcg
cgccgggcacttgactatcttgtcggatttacactatcccctgttttatggcggaagttg
ccaggcgcaaagtctgcaggacgtgtgcaatctgttgcgttgcgcctgatatgtgagcgc
gagcttgaaatcaatgcctttgttcctgaggaatattggagcattgacgcggacttcctg
acggcgtcaaaagacaagattaccgcacgcctgacatatctggacaataacaagctggac
aagttttcactgcccaacgcagaatcagcaaacgctgctgcggaaaaagtgcgcgcaggt
gcattctcagttgctgaagtcacgcaaaaaccggcgaaaagaaacccctccccgcctttc
acaacttctaccctgcaacaagaagcctctcggaagcttggttttggcgccaaacgcacg
atgatggtagcccaaaaactatatgaaggttttgatattgatggcgaaacccagggcctc
atcacttatatgagaaccgatggtgtgagtctggccgacgaagcgatagaaagcgcgcgc
actgtcatcgccaaggaatatggtagtgagtttgtgccggacaagccaagggaatacaag
aacaagtcaaaaaatgcacaagaagctcatgaagcagttcgcccgacggatttaagccgg
actccagcaattgctgcaaagtatctcgatcaggaacatgcacggctgtatgagctgatt
tggaagcggacaattgccagtcagatggagagtgcgcgtctggagcgcacaacaatcgat
ttttctgacggcaaaggtcagacgcttcgcgcgacgggcagtgttgtgaggtttgccggc
tttctgaagctatatgaagaaggccgggatgataccgctgcagacgatgacggcaagcgt
ctcccggcaattgaaaagggagcaacggtcgatacggacatcgtgcgcgaagaccagcat
ttcactgagccagcccctcgttattctgaggccagtctcgtcaaaaaacttgaagaactg
ggcatcggcagaccctccacttacgcctcaatcatttcggtactgcaagaccgcgattat
gtccggattgatcaaaagagatttattcctgaagacaaaggacagcttgtcactgccttc
ttatcctcttttttcacccgatatgttgaatatgatttcaccgcccagctggaagaaaaa
ctggacgatgtttcagatgccaagatcgattggaaacaggtattgcgtgatttctggttt
gatttcaatttgtctgtcgaaggcacgtccgaactgcgcgtcaccgatgtcctggaagaa
cttaatcgggtactaggaccctatgtctttccggaaacggaagaggggaaagatccgcgc
gcctgtccgaaatgcgaagatggcaggcttagcctgaaaaccggccgctttggcgctttc
atcgggtgttccaattacccggagtgccgtttgactcgccaattaggagatgatacaagc
ggcgccgatgacgatacgaatgaagggccaaaagaaatcggcctagatccagcaaccgga
ttaatgatcaccttgcgcaaaggaccctatggtccctatttgcaactaggtgaaccggaa
ccaaagaaaaaacccaaacgcgtttccatcccgaaagatgtccccttggacagtgttgat
ttcgagctggccgttcagcttatggcactgccaagagaagttggcctccatccggaatcc
ggcaccatgatttccgccggacttggacgctatggtccctatgtggaatgcgataagaaa
tatggccgccttaccaatagtatggaggttctcacagttggtatgaaccgcgctgttgaa
ctattggcggcagcgaaaccaagcagtggacgtggcagagccgcaccgccgcttagagta
gttggtcctcatcctgcggatgaagccgacataaatgtgaaagacggtcgttatggggca
tatgtaactcatggcggcattaatgccacaattccaaaaggctctgacccgctgacgatc
actcttgaagaagcggtgaagctgttagcagatcgagcagagaaaagcggcaagaaacca
aaattggccaaaaaggccagcgcgcccaagaaaaaagctgcggcaaaaaagaaacccgca
gccaaaaaatctgtggctgacgcaaaatga
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