Sneathiella marina: NBZ79_13935
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Entry
NBZ79_13935 CDS
T08200
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
snea
Sneathiella marina
Pathway
snea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NBZ79_13935 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snea03021
]
NBZ79_13935 (rpoC)
03400 DNA repair and recombination proteins [BR:
snea03400
]
NBZ79_13935 (rpoC)
Enzymes [BR:
snea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NBZ79_13935 (rpoC)
Transcription machinery [BR:
snea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NBZ79_13935 (rpoC)
DNA repair and recombination proteins [BR:
snea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NBZ79_13935 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
USG60272
UniProt:
A0ABY4W304
LinkDB
All DBs
Position
complement(2884970..2889154)
Genome browser
AA seq
1394 aa
AA seq
DB search
MNELMNLFGQPQGTQAFDEIRISIASPERIRSWSFGEIKKPETINYRTFKPEKDGLFCAR
IFGPIKDYECLCGKYKRMKYRGITCEKCGVEVTLSKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLKDLERILYFENYVVIEPGLSPLKQFQLLSEEEHMDAQDEYGEDAFTAG
IGAEAIRDILSALDLEAIRDEIREEMRTTTSEAKPRKLAKRLKIIEAFMESGNRPEWMIL
QVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLELKGMAATVKMAKKLVEKERPEVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPASGKPIIVPSQDIVLGIYYLTMDIENEPGEGMVIADVAEATHAIEH
NILTLHSKIKTKITVTHEDGSQTRELVETTPGRMLIEEILPKNAKISFNLINRLLTKKEI
TQVIDEVYRHCGQKETVIFADRIMGLGFAHACRAGISFGKDDMRIPVSKEALVEDTRKLA
EEYERQYYDGLITQGEKYNKVIDAWSQCTDKVADEMMKVIEAVEMDEDDRQVGINSIFMM
ANSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVAQDCVVIVEDCGTEKGVTVREVVEGSDIISPLSARLLGRTAA
VDVVNPITGDVIVAGGEMFDEQTSVLAETGGVEQVLIRSVLTCETKGGICGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAEVSSIEASHEGTIKIENRNVV
IDSSGRPIVMGRNAELVLVDSNNRERARHRINYGTRLLVDDGEIAKPGDKLAQWDPFTTP
VITELEGVVGYKDLVNGVSIVDQVDEATGIARKIVVDWKQQPKGSDLRPRVTLRDDKGEL
LTLPSGHEARYFLPVDAILSVEDGASVQAGDIIARIPKESSKTKDITGGLPRVAELFEAR
RPKDHAIIAEADGFVEFGKDYKSKRRVSIRPEGEGAEPVEYLIPKGKHLAVNEGDYVRVG
DYLLDGNPAPHDILKVLGVEALANFLINEIQDVYRLQGVPINDKHIEVICRQMLQKVEIE
KSGESTFLIGEHVDREEFEAQNLKLADEGLEPAQGSPILLGITKASLQTNSFISAASFQE
TTRVLTEASVAGKKDTLTGLKENVIVGRLIPAGTGAQMTRLKLQAAARDRELQENSAPAE
LDVPESSEEMPAAE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagttgatgaacctttttggtcagccacagggcactcaggcttttgatgaaatc
cggatttcgattgcgtccccagaacgcatccggtcctggtcctttggtgagatcaagaaa
cctgaaaccatcaattaccgaacattcaagccagaaaaagatggccttttctgcgccaga
atatttggcccgataaaagattacgaatgtttgtgcggtaaatataagcgcatgaaatac
cgcggcattacatgtgagaaatgcggtgttgaagttacattgtcgaaagttcgccgtgaa
cgtatggctcatatcgagctagcgtcgcctgtggctcatatctggttcctgaaatccctg
ccgtcccgtatcggactgttgctggatatgacgttgaaagacctggaacgcatcctttac
ttcgaaaactatgttgtgatcgaacctggcttgtcaccgcttaaacagttccagctgtta
agcgaagaagagcatatggatgcgcaggacgagtatggcgaagatgcctttactgccggt
atcggtgcagaagctattcgtgatattctttccgcccttgatctggaagctatccgcgat
gaaatccgtgaagaaatgcggacaaccacctcggaggcgaagccacggaagttggcgaag
cgccttaaaattattgaagctttcatggaatcaggcaaccgtcctgaatggatgatcctg
caggtaattccggttatcccgcctgaattgcgcccgcttgtgccacttgacggtggccgg
ttcgcaacgtcggacctgaacgatctctatcgccgggttattaaccggaacaaccgtttg
aagcggctgatcgaactgcgtgctccggatatcattgtccggaacgaaaagcggatgctt
caggaatcagtcgatgccttgtttgacaatggccgccgtggccgggttattacaggtgcc
aataaacgtccgcttaaatccttgtccgatatgcttaaaggtaagcagggacgtttccgt
cagaacctgcttggtaaacgtgtcgactattctggacgatccgttatcgttgttggaccg
gaactgaagttgcaccaatgcgggttgccgaagaaaatggcgctcgagctctttaaaccg
tttatctatgccaagcttgaactaaaaggcatggcggcgacggttaagatggccaagaaa
ctggttgaaaaggagcggccggaagtttgggatatacttgaagaagttatccgcgaacat
cctgtgctattgaaccgggcaccgactttgcacagacttggtattcaggcatttgaacct
gttttgatcgagggtaaggcaattcaattgcatccgttggtctgtacagctttcaacgct
gactttgatggcgaccagatggccgttcatgtaccgttgtcccttgaagcgcagctcgaa
gcccgtgtcctgatgatgtctaccaacaacatcttgagcccggccagtggtaagccgatt
atcgttccaagtcaggacatcgttcttggtatttattacctgacaatggatattgaaaac
gagccaggcgaaggcatggtcatcgcggacgttgcggaagcgacacacgccatcgagcat
aatatcctgacgcttcacagtaagatcaaaacgaagattactgtcactcatgaagacggg
tcgcaaacacgggagctggttgaaacgacaccgggccgtatgctgatcgaagaaattctt
ccgaagaatgccaaaatcagcttcaatctgattaaccgcctgttgaccaagaaggaaatc
acccaggtgattgacgaggtttatcgtcattgcggtcagaaggaaacggttatatttgcc
gaccggatcatgggtctgggatttgcgcatgcgtgccgtgccggtatttctttcggcaag
gacgacatgagaattccggtttcgaaggaagctcttgttgaggatactcggaaactcgcc
gaagaatatgagcgccaatattatgatggcctgattacgcaaggtgagaagtacaacaag
gttattgatgcctggtcacaatgtacggacaaggttgcggatgaaatgatgaaggtcatt
gaagccgtggaaatggacgaggatgatcgccaggttggtattaactcaatctttatgatg
gccaattccggagcccgtggttccgcggcccagatgaagcagctggcgggaatgcgtgga
ttgatggcgaagccgtccggcgagatcattgaaacaccgattatctccaactttaaggaa
gggttgagcgttcttgaatatttcaactcgacccatggagcccgtaaaggtcttgcagat
acagccttgaaaaccgctaactccggttatctgacacgccgtcttgttgatgtcgcgcag
gattgcgtcgtcatcgttgaggattgcggaacagaaaaaggtgtaactgttcgtgaagtc
gtcgaaggcagtgatattatttcaccgctcagcgcacgacttctgggtcggaccgcagca
gttgatgtcgttaatccaataacgggtgacgtcattgtcgccggcggtgaaatgttcgat
gaacagacttctgtgctggccgaaaccggtggggtggaacaggttctgatccgctccgtg
ttgacatgtgaaactaaaggcgggatttgcggtaaatgttatggccgtgacctggcgcgg
ggaacccctgtcaatattggcgaagcagttggcgttattgcagcgcaatcaattggtgag
ccgggtacccagctgaccatgcggacattccatattgggggtacggcgcaggttgctgaa
gtttcctctatcgaagcatcgcacgagggaacgattaaaatcgaaaaccgcaatgtggtt
atcgacagcagcggccgtccgattgttatgggacggaatgctgaacttgttcttgttgac
agcaataaccgcgagcgggcacgccatagaattaattatggtacacgcttgcttgttgac
gacggagaaatcgcgaaaccaggtgataaactggcgcaatgggatccgtttacaacgccg
gtgattacggaacttgaaggtgtcgtcggatataaagatctggtcaatggtgtatcgatt
gtcgatcaggtcgatgaagccactggtatcgctcgtaagatcgtcgtggattggaagcag
cagccgaaaggcagcgatttgcgtccccgggtgacattgcgtgacgacaaaggggagctt
ctcacattgccaagtggccatgaggcacggtacttcctgcctgtagacgcgatcttgtcc
gtggaagatggtgcttctgttcaggccggtgatattatcgcgcgtattccgaaggaaagc
tcgaaaacgaaggatattacaggtggtctgccgcgtgtggcggaactatttgaagcgcga
cgtccgaaagaccatgcgattattgccgaagcagacggctttgttgaatttggaaaagac
tacaaatccaagcgccgggtttccattcgtcctgagggcgaaggggctgaaccggttgag
tatttaattccaaaaggcaagcatcttgcagttaatgaaggggattatgtaagggtaggg
gattacctgcttgatggtaatcctgcaccgcatgatattctgaaagtcctgggtgttgaa
gcattggcgaacttcctgatcaatgaaattcaggatgtctaccgtttgcaaggcgtgccg
atcaacgacaaacatattgaagttatctgccgtcagatgttgcagaaagtcgagattgaa
aaatctggtgaaagcacgttccttattggtgagcatgttgatcgcgaagaatttgaagct
caaaatctgaaactggctgacgagggacttgagcctgcgcaaggaagcccaattttgttg
ggtatcacgaaagcaagcttgcagacgaattcctttatctcagcggcatctttccaggaa
acgacccgcgttcttaccgaggcctctgtcgccggcaagaaagatacactgacaggcctg
aaagagaatgtcattgttggtcggttgatcccggcgggaaccggtgcacagatgacccgc
cttaaactgcaggcagctgcccgtgaccgggaacttcaggaaaattcggctccagctgag
ttggatgtgccagagtcgtccgaagaaatgccggctgcagaataa
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