Sneathiella marina: NBZ79_14530
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Entry
NBZ79_14530 CDS
T08200
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
snea
Sneathiella marina
Pathway
snea03420
Nucleotide excision repair
snea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NBZ79_14530
03430 Mismatch repair
NBZ79_14530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snea03400
]
NBZ79_14530
Enzymes [BR:
snea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NBZ79_14530
DNA repair and recombination proteins [BR:
snea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NBZ79_14530
MMR (mismatch excision repair)
Other MMR factors
NBZ79_14530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
USG60385
LinkDB
All DBs
Position
3004170..3006449
Genome browser
AA seq
759 aa
AA seq
DB search
MSDNFDIGNFDAPQEASPPPDLSYLNGLNEGQTAAVQSLDGPVLVLAGAGTGKTRVLITR
LAHILNMRDVRPWEILAVTFTNKAAAEMRERTANLVGPQAIEIKLGTFHSIGVWLLRRHA
ELVGLNTNFTILDTDDQLRLLKQILVDEGIDVKKWPPRGLAAVIDRWKDKGLRPDQVKDL
DGNGFAHGRAGELYKIYQTRLTAQNACDFGDLLLHILTLFQQNPEILAQYQNRFKYILVD
EYQDTNVAQYLMLRLLAQKHKNICCVGDDDQSIYGWRGAEVGNILKFEDDFPGADVIRLE
RNYRSTSHILGAASGLISRNESRLGKTLFTEGNDGEKVVLNGLWDGGNEARWVADEIENI
ERKGASLKDVAILVRASFQTRDFEECFLSMGIKYRVIGGLRFYERREIRDVLAYLRVINQ
ADDDLAFERIYNLPKRGLGAKALEKIRNIGRANNLSLSRAAVLAVEQKLFKGKPLAALSE
LCANFEHWRAQKDLIPPNELVEAVLEESGYFDMWRQDKSVEAEGKKENLKELGPALADYE
SLGQFLEHVSLVMENNEDKSDEMVSVMTLHSAKGLEYDTVFLPGWEEGLFPHQRALDENG
LKALEEERRLAYVGITRAKLRCYISHASNRRIHGQWQSSLPSRFVDELPKEHIADQSEQG
VYNTSRASDASSTFTWRTAEPTHYTDVMKKRAAANEALVDNTTQPLKSDGSDTGKEVGSR
IFHQKFGYGRILRKDGPKLEIAFEKAGTKKVMENFVQTC
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaatttcgacattggtaattttgacgcccctcaagaagcgtcgccgccccca
gacctttcctatctaaatggcctgaatgaagggcaaacagcggctgtacaatctcttgac
ggacccgttttggttcttgccggagcgggtacggggaaaacacgtgtactgatcaccagg
ctggctcatatcctgaatatgcgtgatgtacgcccgtgggagattcttgccgttaccttt
acgaacaaggccgcggccgaaatgcgagagcgaaccgcaaatcttgtcgggccacaagcc
attgaaattaagcttgggaccttccactcaattggcgtctggttactacgccgccacgct
gaattggtcggcctcaataccaatttcacaatcctggatacagatgatcaacttagattg
ctgaagcaaatcctggttgacgaaggcatcgacgtaaaaaaatggcctccgcggggatta
gcggcagtcattgaccgctggaaagacaagggtttacgtccggatcaagtgaaagatctg
gatggtaatggattcgcccatggccgtgccggtgaattatacaaaatctaccaaacccga
ctgaccgcccagaatgcgtgtgattttggcgatttactgctgcatatcctgacactcttc
cagcaaaacccggagattcttgcgcaatatcaaaaccgcttcaaatatattcttgttgat
gaatatcaagataccaatgtggcccagtatttaatgcttcgtttattggcgcagaaacat
aagaacatatgctgcgttggcgatgatgatcagtctatttatggttggcgcggtgctgaa
gtcggcaatatattgaagtttgaagacgactttccaggtgccgatgtaattcgcttggaa
agaaattatcgttctacatcgcatatattgggtgccgcatcaggactcatttcccgaaac
gagagccggcttggcaaaaccttgttcacggaaggaaatgacggtgagaaagttgttctc
aacgggctgtgggatggtggaaacgaagctcggtgggttgcggatgaaatcgaaaatatc
gaacgcaaaggtgccagcttaaaagatgtagcaattttggtccgcgccagttttcaaacc
cgtgacttcgaagaatgcttcttaagcatgggaattaaatatcgcgtcattggtggcctg
agattttacgaacgccgtgaaatacgcgatgtcctcgcctatcttcgggtcattaatcag
gcggatgatgatttggcttttgagcgaatttacaatttgccgaaaagaggccttggtgcc
aaagccctggaaaaaatccgaaatattggtcgcgctaacaatctgtcactttcccgggca
gctgttcttgccgttgaacaaaaattgtttaaggggaagcccctcgccgctctttctgag
ttatgcgcaaatttcgaacactggcgggctcagaaagacctaattccaccgaatgagcta
gttgaggcggttcttgaagagagcgggtattttgacatgtggcgtcaggataaatcagtc
gaagccgaagggaagaaagaaaacctgaaagaactaggcccggcactggcggattatgaa
agtcttggacaatttttggaacatgtgtcccttgttatggagaataacgaggataaaagt
gacgaaatggtaagcgttatgacactccattccgcaaaagggttggaatatgacaccgtt
ttccttccgggttgggaagaaggcttatttcctcatcagcgggcccttgacgagaatggc
ctaaaagcactcgaagaggaacgacgccttgcatatgttggcattacgcgcgccaaattg
cggtgttatatcagtcacgccagtaatcgccgtatccatggacaatggcagtcttcatta
ccaagccggttcgtcgacgaattgcccaaagaacatattgccgatcaatctgaacaaggt
gtgtacaacacatcgcgcgcttccgacgcatcctcaacgttcacatggcgaacggcggag
cccacccattacaccgatgtaatgaaaaaacgggctgctgccaacgaagccctggtggac
aatacaacacagcccttgaagtcagacggcagtgacaccggcaaggaagttggcagtcgt
atatttcaccagaaattcggttatggccgtattttgcggaaagatggtccgaaactcgaa
atcgctttcgagaaagcgggtacaaagaaagtgatggaaaattttgtccaaacctgctga
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