Sneathiella marina: NBZ79_17370
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Entry
NBZ79_17370 CDS
T08200
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
snea
Sneathiella marina
Pathway
snea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBZ79_17370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snea03019
]
NBZ79_17370
Enzymes [BR:
snea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NBZ79_17370
Messenger RNA biogenesis [BR:
snea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NBZ79_17370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Utp25_C
UTP25_NTPase-like
SUa-2TM
Flavi_DEAD
Shikimate_DH
AAA_22
CheB_methylest
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
USG60931
LinkDB
All DBs
Position
complement(3601849..3603198)
Genome browser
AA seq
449 aa
AA seq
DB search
MMSKFSDSGLNQSVLRAVQEGGYEEMTPIQSQAIPNILEGKDLVGLAQTGTGKTAAFSLP
IIQKLLKDEGKRNPKEARSLILAPTRELAVQIAENIKGYTKYLHLRMALVYGGASPKSQV
KAMLSGADILVATPGRLLDLMNQKHINLQSVEFLVLDEADRMLDMGFIRDIRKIIDRLPK
DRQTVLFSATMPKSVEGLAASILKDPVRIQVAPTATTAEKVDQHVLMVPKGRKRQLLAHL
LKDEALKRVLIFTRTKHGANRVSRQLEQLGISSGAIHGNKSQNARQKALNEFRTGDIRAL
VATDVAARGIDVNDVSHVINYEIPNEPESYVHRIGRTARAGAAGVSLSFVDHDERSYLRD
IEKTIRKQLPLMEDHPFHSEGIAPLAEKDDSGTTDRPNNRNRRSNSGKHKPNRRINQPKS
NSAKPGSGAQRKGRPSNRRSRPAKSGAQG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtaaattttcggattccggacttaaccaatccgtcctgcgtgctgtgcaggag
ggtggttatgaagagatgaccccaatccagagccaggctatcccgaatattctcgaaggg
aaagatctggtcgggttggcacagaccggaaccggtaagactgccgccttttcacttcct
atcatccagaagctattgaaagatgaaggcaagcgtaacccgaaggaagcacggtctctc
atccttgccccgaccagggaattggcagtccagatagcggagaacatcaagggttatacc
aaatatctgcatttgcgcatggcgctggtttacgggggcgcatctcccaagtcgcaagta
aaagccatgctttccggcgctgatattcttgtcgcaacgccgggccgactgctcgattta
atgaaccaaaagcatatcaacttacagtctgttgaatttttggtattggatgaagccgac
cggatgcttgatatgggttttatccgcgatatacggaaaatcatcgatcgcttgcctaaa
gatcggcagacagttcttttctcggcaacaatgccgaaatccgttgaaggtcttgccgcc
agtattttaaaagacccggtgcgaatacaagttgcgccaaccgcgacgactgcggaaaaa
gtggaccagcatgtcctgatggttccaaaaggccgcaagcgtcaattgttggcacattta
cttaaagatgaggcgttgaaacgcgttttgatctttacccggaccaagcatggtgcgaac
cgtgtttcccggcagcttgagcaattaggtatttcgtccggcgcaatccatggcaataaa
tcccagaatgcccgtcagaaagccttgaacgaatttcgaaccggcgatattcgggcgctg
gttgccacagacgtcgcggcccggggcatagatgtaaatgacgttagccatgtgatcaat
tacgaaatcccgaacgagcctgaaagctatgtgcatcgcatcggtcgaacggctcgtgcg
ggagcggcgggcgtctctctctcctttgtggatcatgacgagcgcagttatttgcgagat
atcgaaaagaccatccgaaagcagttaccgcttatggaagaccatccttttcacagcgaa
gggatcgcgccattggcggaaaaagatgacagcggaaccacggaccggcccaataaccga
aaccggcgctcaaattcgggtaaacacaaaccgaaccggcgtatcaatcaacccaaatcc
aatagtgccaaaccgggaagtggcgcgcaacgcaaaggccggccttcaaatcgtcggtcg
cggcccgccaagtcaggggcgcagggttaa
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