Serratia nematodiphila: NLX84_00020
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Entry
NLX84_00020 CDS
T08619
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
snem
Serratia nematodiphila
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snem03032
]
NLX84_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
snem03400
]
NLX84_00020 (gyrB)
Enzymes [BR:
snem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
NLX84_00020 (gyrB)
DNA replication proteins [BR:
snem03032
]
Prokaryotic type
DNA Topoisomerases
NLX84_00020 (gyrB)
DNA repair and recombination proteins [BR:
snem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NLX84_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
GyrB_hook
Toprim
HATPase_c
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
UTO01547
LinkDB
All DBs
Position
3650..6064
Genome browser
AA seq
804 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQ
VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLNVVGETEQTGTMVRFWPSHQTFTNVT
EFEYDILAKRLRELSFLNSGVSIRLKDKRTDREDHFHYEGGIKAFVEYLNKNKTPIHPNV
FYFSTVKDDIGVEVALQWNDGFQENIYCFANNIPQRDGGTHLVGFRTAMTRTLNSYMEKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVDY
LMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYSPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVKKG
KQEQYIKDDEAMDQYQIAIAMDGATLHTNASAPALGGEQLEKLVAEHYGVQKLIGRMERR
YPRALLNSLIYQPTLNEGDLSDEAKVKTWIASLVQALNDKEQHGSSYDFVIFENRERQMF
EPALRIRTHGVDTDYKLDFDFIHGGEYRKICQLGEQLRGLIEEGAFIERGERRQPVDSFE
QALEWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctcaagtatcaaggtattaaaagggctggatgcggtgcgc
aagcgcccgggcatgtatatcggcgataccgatgacggcaccggtctgcaccacatggta
ttcgaggttgtggacaacgctatcgacgaagcgctcgcgggccactgtagtgacattcag
gtcaccatccatgccgacaactcggtatcggtacaggatgacggccgcggcattccgacc
ggcattcacccggaagaaggggtttcagccgcagaggtcatcatgaccgtgctgcacgcc
ggcggtaaattcgacgacaactcctataaagtttccggcggcctgcacggcgtgggcgtc
tcggtggttaacgccctgtcggagaaactggagttggtgatccgtcgcgaaggcaaagtg
cacgaacagacttacagccacggcgagccgcaggcgccgctgaacgtggtgggcgaaacc
gagcagaccggcaccatggtgcgtttctggccgagccaccagaccttcaccaacgtgacc
gaattcgagtacgacattctggccaagcgcctgcgcgagctgtccttcctcaactccggc
gtgtctattcgcctgaaggacaagcgcaccgaccgtgaagaccacttccattacgaaggc
ggcatcaaggcgtttgtcgagtacctgaacaagaacaaaaccccgatccacccgaacgtg
ttctacttctccaccgtgaaagacgacatcggcgtggaagtggcgctgcagtggaacgac
ggtttccaggaaaacatctactgcttcgccaacaacattccgcagcgcgacggcggcacg
cacctggtcggtttccgtaccgcgatgacccgtacgctgaacagctacatggagaaggaa
ggttacagcaagaaggccaaggtcagcgccaccggcgatgacgcgcgtgaaggcctgatc
gccgtggtgtcggtgaaggtgccggatccgaagttctcctctcagaccaaggacaagctg
gtctcttccgaggtgaaaaccgcggttgaaacgctgatgaacgagaagctggtggattac
ctgatggagaacccgggcgacgcgaaaatcgtggtcggcaaaatcatcgacgcggcgcgc
gcgcgcgaagcggcgcgtaaagcgcgtgagatgacccgccgcaaaggcgcgctggatctg
gccggcctgccgggcaagctggcggactgccaggaacgcgatccggcgctgtccgaactg
tacctggtggaaggggactccgcgggcggctctgccaagcaggggcgcaaccgcaagaat
caggctatcttgccgctgaaggggaaaatcctcaacgtcgagaaagcgcgtttcgacaaa
atgctctcttcgcaggaagtggcgacgctgatcaccgcgctgggttgcggcatcggccgc
gacgagtacagcccggacaagctgcgttatcacagcatcatcatcatgaccgatgccgac
gtcgacggttcgcacatccgtacgctgctgttgaccttcttctaccgccagatgccggaa
atcatcgagcgtggccacgtgttcatcgcacagccgccgctgtacaaggtgaagaaaggc
aagcaggagcagtacatcaaagatgacgaggcgatggatcagtaccagatcgccatcgcg
atggacggcgctacgctgcacaccaacgccagcgcaccggcgctcggcggcgagcagttg
gaaaaactggtggccgagcactacggcgtgcagaagctgattggccgcatggagcgccgc
tacccgcgcgcgctgctgaacagcctgatctaccagccgacgctgaacgaaggcgatctc
agcgatgaagccaaggtgaagacctggatcgcgtcgctggtgcaggcgctgaacgacaaa
gagcagcacggcagcagctatgatttcgtgatcttcgagaaccgtgagcgccagatgttt
gagccggcgttgcgcatccgcacccacggcgtggataccgactacaagctggactttgac
ttcatccacggcggtgaataccgcaagatctgccagctgggcgagcagctgcgcgggctg
atcgaagagggcgcgttcatcgagcgcggcgaacgccgtcagccggtagacagcttcgaa
caggcgctggagtggctggtgaaagagtcgcgccgcggcctgtcggtgcagcgttataaa
ggtctgggcgagatgaacccggagcagctgtgggaaaccaccatggatccggaaagccgc
cgcatgctgcgcgtgaccgtcaaggacgccatcgctgccgatcagctgttcaccacgctg
atgggcgatgcggttgagccgcgccgcgcctttatcgaagaaaacgccctgaaagcggcg
aacatcgatatctga
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