Serratia nematodiphila: NLX84_00535
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Entry
NLX84_00535 CDS
T08619
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
snem
Serratia nematodiphila
Pathway
snem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLX84_00535 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snem03019
]
NLX84_00535 (rhlB)
Enzymes [BR:
snem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NLX84_00535 (rhlB)
Messenger RNA biogenesis [BR:
snem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLX84_00535 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UTO01640
LinkDB
All DBs
Position
complement(124643..125929)
Genome browser
AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYTKQNYVDLGAMQVVVLDEADRMYDLGFIKDIR
WLFRRMPAADQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIDHSIPVSKYNSDALLTDLPAPKRLSRPRGGNGPRRNSAPRRGGAP
RNNRKRSS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgagaaaaaagggtttcacaattgcacgcccatccaggcgttagcattg
ccgctcacgctctccgggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ctggcgtttttggcgtctacttttcactatttgctgactcacccggcgaaacaggatcgc
cagaccaatcagccgcgcgccttgatcatggcgcctacgcgtgaactggcggtgcaaatc
cactccgatgcggaagcgctctcccagagcaccggcctgaaactgggcctggcctacggc
ggcgacggctacgacaaacagctgaaagtgctggaaagcggcgtggacattctgattggc
accaccggccgtttaatcgattacaccaaacagaactatgtcgatctcggcgcgatgcag
gtcgtcgtgctggatgaagccgatcgcatgtacgatcttggctttatcaaagacatccgt
tggctgttccgccgcatgcctgcggccgatcaacgcctgaacatgctgttctccgctacc
ctgtcctatcgcgtacgcgaactggccttcgagcagatgaacaacgccgaatatgttgaa
gtggaaccggaacagaaaaccggccaccgcattaaagaagagctgttctacccgtccaac
gaagaaaaaatgcgtctgctgcagacgctgatcgaagaagagtggccggatcgcgccatc
atctttgccaacaccaagcaccgctgcgaagacatctggggccatctggccgccgacggt
caccgcgtgggcctgctgaccggtgacgtggcgcagaaaaaacgcctgcgcatcctcgac
gacttcaccaaaggcaatctcgatattctggtcgccaccgacgtcgcggcgcgcggtctg
cacatcccttccgtcacgcacgtcttcaactacgacctgcctgacgactgcgaagactac
gtgcaccgcatcggccgtaccggccgcgcaggcgccagcggccactccatcagcctggcg
tgtgaagagtatgcgctcaacctgccggcgatcgagacctatatcgaccacagcattccg
gtgagcaagtacaacagcgatgcgctgctgaccgatttgccggcgccgaagcgcctgtcg
cgcccgcgcggcggcaacggcccacgtcgcaactccgcgcctcgtcgcggcggcgcgccg
cgcaacaaccgtaaacgttcgagctga
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