Serratia nematodiphila: NLX84_00545
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Entry
NLX84_00545 CDS
T08619
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
snem
Serratia nematodiphila
Pathway
snem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLX84_00545 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snem03021
]
NLX84_00545 (rho)
03019 Messenger RNA biogenesis [BR:
snem03019
]
NLX84_00545 (rho)
Transcription machinery [BR:
snem03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NLX84_00545 (rho)
Messenger RNA biogenesis [BR:
snem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NLX84_00545 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
UTO01642
LinkDB
All DBs
Position
126788..128047
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgcatgcgcaagcaggacattatcttctccattctgaag
caacatgcgaaaagcggagaagatatcttcggcgacggcgtgctcgagatattgcaggat
ggattcggtttcctccgctctggagacagttcctacctcgccggtcccgacgacatctac
gtatcccctagccaaatccgccgcttcaacctccgcactggtgacaccatttccggtaag
attcgtccgccaaaagaaggcgagcgctattttgccctgttgaaagtcaacgaagtcaac
tacgacaagccggaaaacgcccgcagcaagatcctgttcgagaacttgacgccgctgcac
gccaattcccgtctgcggatggagcgcggcaacggctcgaccgaagaccttacggcgcgc
gtactggatctggcggcgcctattggccgcggccagcgtggcctgatcgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaatatcgcgcagagcatcgcctacaaccaccca
gactgcgtgctgatggtgctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgcctggtgaaaggcgaagtgatcgcctcgaccttcgacgagccggcttcgcgtcacgtg
caagtggccgaaatggtgatcgagaaggccaagcgcctggttgagcacaagaaagacgtg
atcattctgctcgactccatcacccgtctggcgcgtgcttacaacaccgtggtgccggcc
tctggcaaggtgctgaccggtggtgtggacgccaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcgcgtaacgtggaagagggcggcagcctgaccatcatcgcgaccgcgctg
gttgataccggttcgaagatggacgaagtgatctacgaagaatttaaaggtaccggcaac
atggaattgcatctggcgcgtaaaatcgccgagaaacgcgtattccctgcgatcgattac
aaccgctccggtacccgtaaagaagagctgctcaccacttccgaagagctgcagaaaatg
tggatcctgcgcaaaatcattcacccgatgggtgagattgacgcgatggagttcctcatt
aataagttggcgatgactaaaaccaacgatgaattcttcgatatgatgaaacgctcataa
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