Serratia nematodiphila: NLX84_01030
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Entry
NLX84_01030 CDS
T08619
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
snem
Serratia nematodiphila
Pathway
snem00071
Fatty acid degradation
snem00280
Valine, leucine and isoleucine degradation
snem00310
Lysine degradation
snem00362
Benzoate degradation
snem00380
Tryptophan metabolism
snem00410
beta-Alanine metabolism
snem00640
Propanoate metabolism
snem00650
Butanoate metabolism
snem00907
Pinene, camphor and geraniol degradation
snem00930
Caprolactam degradation
snem01100
Metabolic pathways
snem01110
Biosynthesis of secondary metabolites
snem01120
Microbial metabolism in diverse environments
snem01200
Carbon metabolism
snem01212
Fatty acid metabolism
Module
snem_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
NLX84_01030 (fadB)
00650 Butanoate metabolism
NLX84_01030 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
NLX84_01030 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
NLX84_01030 (fadB)
00310 Lysine degradation
NLX84_01030 (fadB)
00380 Tryptophan metabolism
NLX84_01030 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
NLX84_01030 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
NLX84_01030 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
NLX84_01030 (fadB)
00930 Caprolactam degradation
NLX84_01030 (fadB)
Enzymes [BR:
snem01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
NLX84_01030 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
NLX84_01030 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
NLX84_01030 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
NLX84_01030 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
Motif
Other DBs
NCBI-ProteinID:
UTO01732
LinkDB
All DBs
Position
complement(226573..228762)
Genome browser
AA seq
729 aa
AA seq
DB search
MLYQGETLQLHWLDNGIAELVFNASGSVNKLDTRTVASLGEALTVLENQPELKGLLLRST
KAAFIVGADITEFLSLFAAPAEKLHEWLVFANNVFNRLEDLPVPTISAINGYALGGGCEC
ILATDFRVASPDARIGLPETKLGIMPGFGGSVRLPRLLGNDSALEIIAAGKDVSAKDALK
VGLVDAVVTPEKLAEAALNMLQQAIDGKLDWRAARQPKLEPLKLSPIEAAMSFTTAKGMV
LQTAGKHYPAPMTAVKTIEAAAKLGRDEALKLETASFVPLARSNEARALVGIFLNDQFVK
GQAKKLAKNVDAPKQAAVLGAGIMGGGIAYQSALKGVPVIMKDISDKSLTLGMSEAAKLL
NKQLERGKLDGLKMAQVLSTIQPTLDYAGIERAQVIVEAVVENPKIKAAVLSEVEGLIGE
DTVLASNTSTIPINHLAKSLKRPQNFCGMHFFNPVHRMPLVEIIRGEQTSDDTIAKVVAY
ASRMGKTPIVVNDCPGFFVNRVLFPYFAGFSLLLRDGADFRQIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPDRMSKDYRDAIDVMFDNQRFGQKNQLGFYRYSQDSKGKP
RKDNDEQTDALLAEVSQPRQTISDEEIIARMMIPMINEVVRCLEEKIVASPAEADMALVY
GIGFPPFHGGAFRYLDTLGTANYVELAQRYAHLGALYQVPAGLRAKAERNESYYPVATPL
SDVATRQPA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgctctaccaaggcgaaacattacaactgcactggctcgataacggcattgccgagctg
gtgttcaacgcatcaggctcggtcaacaagctggacacccgcaccgtcgccagcctgggc
gaggcgctcaccgtgctggaaaaccagcctgagctcaaggggctgctgctgcgctccacc
aaagccgcatttatcgtcggcgccgatatcaccgaattcctttctctgtttgccgcaccg
gctgaaaagctgcacgagtggctggtattcgccaacaacgtctttaaccggctggaagat
ttgccggtaccgaccatttcggccattaacggctatgcgctcggcggcggttgcgaatgc
attctggcgaccgatttccgcgtcgcctcgccggacgcgcgcatcggcctgccggaaacc
aaattgggcatcatgccgggcttcggcggttccgtccgtctgccacgcctgctgggtaac
gacagcgcgctggaaatcatcgccgccggcaaagacgtcagcgccaaagacgcgttgaaa
gtcggcctggtcgatgcggtagtgacgccggaaaaactggccgaagcggcgctcaacatg
ctgcaacaggcgatcgacggcaagctggactggcgcgccgcgcgtcaacctaagctggag
ccgctgaaactcagcccgattgaagcggcgatgagcttcactactgccaaaggcatggtg
ctgcagaccgccggtaaacattacccggcgccgatgaccgcagtgaagaccattgaagcc
gccgccaagctgggccgcgatgaagcgctgaaactggaaaccgccagcttcgtgccgttg
gcccgctccaacgaagcgcgcgcgctggtcggcatcttccttaacgatcagttcgtgaag
ggccaggcgaaaaagctggccaagaatgtggatgcgccaaaacaggcggcggtgctgggc
gccggcatcatgggcggcggtatcgcttaccaatcggcgctgaaaggcgtaccggtgatc
atgaaagacatcagcgacaagtcgctgacgctgggcatgagcgaagcggccaagctgctc
aacaagcagctggagcgcggcaagctggatggcctgaaaatggcgcaggtgctgtcgacc
attcagccgacgctggactacgccggcatcgagcgcgcgcaggtgatcgttgaggcggtc
gtcgagaatccgaaaatcaaagccgccgtgctgtcggaagtggaaggcctgatcggtgaa
gacaccgttctggcgtcgaacacctcgaccattccgattaatcacctggcaaaatcgctg
aagcgcccgcaaaacttctgcggcatgcacttctttaacccggtgcaccgcatgccgctg
gttgaaatcatccgcggcgaacagaccagcgatgacaccatcgccaaagtggtggcctac
gccagccgcatgggcaaaacgccgatcgtggtgaacgattgcccgggcttcttcgtcaac
cgcgtgctgttcccgtacttcgccggcttcagcctgctgctgcgcgacggcgccgacttc
cgtcaaatcgataaagtgatggaaaaacagttcggctggccgatgggcccggcctacctg
ctcgacgtcgtgggcatcgacaccgcgcaccacgcgcaggccgtgatggccgccggtttc
ccggatcgcatgagcaaagactaccgtgacgccattgacgtgatgttcgacaaccagcgc
ttcggccagaaaaatcaactgggcttctaccgctacagccaggacagcaaaggcaagccg
cgcaaggacaacgatgagcaaaccgatgcgctgctggccgaagtgagccaaccgcgccag
accatcagcgacgaagaaatcatcgcgcgcatgatgatcccgatgatcaacgaagtggtg
cgttgcctggaagaaaagatcgtcgccagcccggccgaagccgatatggcgttggtctac
ggcatcggtttccctccgttccacggcggcgcgttccgctacctggatacgctcggcacc
gccaactacgttgagctggcccagcgttacgcacacctcggcgccctgtaccaggtgccg
gccggtctgcgcgccaaggccgaacgcaatgaaagctactacccggtggcgacaccgctg
tccgacgtcgctacccgccaaccggcatga
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