Serratia nematodiphila: NLX84_01215
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Entry
NLX84_01215 CDS
T08619
Symbol
thiC
Name
(GenBank) phosphomethylpyrimidine synthase ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
snem
Serratia nematodiphila
Pathway
snem00730
Thiamine metabolism
snem01100
Metabolic pathways
snem01240
Biosynthesis of cofactors
Module
snem_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
NLX84_01215 (thiC)
Enzymes [BR:
snem01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
NLX84_01215 (thiC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
UTO01757
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All DBs
Position
complement(266113..268056)
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AA seq
647 aa
AA seq
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MSNVNPPRARKAQREAAQQFIDTLQGMAFPNSRRIYLQGSRRDIQVPMREIQLSPTLVGG
SKDNPQYEPNEAIPVYDTAGPYGDPQAELDVHAGLAKLRAGWIDARGDTATLSGASSGFT
QQRLADEGLDHLRFEHLPLPRKALPGKCVTQLHYARAGIVTPEMEFIAIRENMGRERIRG
KVLRHQHPGQGWGANLPDNITPEFVRQEVAAGRAIIPANINHPEAEPMIIGRNFLVKVNA
NIGNSAVTSSIEEEVEKLVWATRWGADTVMDLSTGRYIHETREWILRNSPVPIGTVPIYQ
ALEKVNGVAENLTWEMFRDTLLEQAEQGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSI
MAKWCLSHHQENFLYQHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFAELHTLGE
LTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEELEHCHEAPFYTLGPLTTDIAPGYDHFTS
GIGAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAADLAKGHPGAQIRDN
AMSKARFEFRWEDQFNLALDPATARAYHDETLPQESGKIAHFCSMCGPKFCSMKISQEVR
DYAAAQEAAKPIEVQLTGMEKMSAEFRARGSELYHSAGNLQEETSND
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgttaatccaccgcgcgcccgtaaagcgcaacgcgaagccgctcagcagttt
atcgacaccctgcaaggcatggctttcccaaactcacgccgcatctacctgcagggttcg
cgccgcgatatccaggtgccgatgcgtgaaattcagctcagcccgaccctggtcggcggc
agcaaagataacccgcagtatgaacccaacgaggcgatcccggtgtatgacaccgccggc
ccgtacggcgatccacaggccgagctcgacgtgcacgccggcctggccaagctgcgcgcc
ggctggatcgacgcacgcggcgataccgccaccctgagcggtgccagctccggcttcacc
cagcagcggctggcggacgaaggtctcgatcacctgcgtttcgaacacctgccgctgccg
cgcaaagcgctgccgggcaagtgcgtaacccagttgcactacgcccgcgccggcatcgtc
accccggagatggaattcatcgccatccgtgaaaacatggggcgcgaacgcattcgcggc
aaggtgctgcgccaccagcatccgggccagggctggggcgccaacctgccggacaacatc
acgccggagttcgtgcgccaggaagtggccgccggccgcgctatcattcccgccaacatc
aatcacccggaagcggagccgatgattatcggccgcaatttcctggtaaaggtgaacgcc
aatatcggcaactcggcggtcacgtcgtcgatcgaagaagaggtggagaagctggtatgg
gccacccgctggggcgcagacaccgtgatggatctctccaccggccgctacattcacgaa
acccgcgagtggatcctgcgcaacagcccggtgcccatcggcaccgtgccgatctaccag
gcgctggagaaggtcaacggcgtggcggaaaacctcacctgggagatgttccgcgatacg
ctgctggaacaggcggagcaaggggtcgactacttcaccatccacgccggcgtgctgctg
cgctacgtgccgatgaccgccaaacgcctgaccggcatcgtgtcgcgcggcggctcgatc
atggccaaatggtgtctgtcgcaccatcaggaaaacttcctctatcagcatttccgcgaa
atctgtgagatctgcgccgcctacgacgtttcgctgtcgctcggcgacggcctgcgcccc
ggctcaattcaggacgccaacgacgaagcccagttcgccgaactgcatacgctgggcgag
ctgaccaaaatcgcctgggaatacgacgtgcaggtgatgatcgagggcccaggccacgtg
ccgatgcagatgatccgccgcaacatgaccgaagagctggaacactgccacgaagcgcca
ttctacaccctcggcccgctgaccaccgatatcgccccgggctatgaccatttcacctcc
ggcatcggcgcggcgatgatcggctggttcggctgcgccatgctgtgttacgtcacgccg
aaagagcacctcggcctgccaaacaaagaggacgtcaaacagggcctgatcacctacaag
atcgccgctcacgccgccgatctggccaaaggccatccgggcgcacagatccgcgataac
gccatgtccaaggcgcgtttcgaattccgctgggaagatcagttcaatctggcgctcgat
ccggccaccgcgcgcgcctatcacgacgaaaccctgccgcaggaatccggcaagatcgcc
cacttctgctcgatgtgcggaccaaaattctgctcgatgaagatttcacaagaggtgcgg
gactacgccgccgcccaagaggccgccaaaccgatcgaggtgcagctgaccggcatggag
aaaatgtccgccgagttccgcgcccgcggcagcgagctgtatcacagcgccggcaatttg
caggaggagaccagcaatgactga
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