Serratia nematodiphila: NLX84_02060
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Entry
NLX84_02060 CDS
T08619
Symbol
speF
Name
(GenBank) ornithine decarboxylase SpeF
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
snem
Serratia nematodiphila
Pathway
snem00330
Arginine and proline metabolism
snem00480
Glutathione metabolism
snem01100
Metabolic pathways
snem01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
NLX84_02060 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
NLX84_02060 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
NLX84_02060 (speF)
Enzymes [BR:
snem01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
NLX84_02060 (speF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
UTO01905
LinkDB
All DBs
Position
complement(446948..449110)
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AA seq
720 aa
AA seq
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MKKLKIAANTQTLGCFETERDIVDVHHSDFNDVAAIVLSVDDVAQGMVARIEGHGLNIPL
FVAVCCEEELDNAVLPALHGVFELCGKNTQFYGKQLEAAAAKYESELLPPFFNTLTQYVE
MGNATFACPGHQGGEFFRKHPAGRQFFDFYGETLFRSDMCNADVKLGDLLIHEGAPCAAQ
QHAAKVFNADKTYFVLNGTSASNKVATNALLTRGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDAHCFVERYLRQQIREVAPERANEARPFRLAIIQLGTYDGTIYNA
RQVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGIIVTQSVHKQQAGF
SQTSQIHKKDKHIKGQSRYCNHKRFNNAFMLHASTSPFYPLFAALDVNAKMHEGKSGQRL
WQECVRVGIEARKMLLDTCTMIKPFVPDQIDGKPWQAYDTAAMANDLRFFNFVPGEKWHA
FEGYAESQYFVDPCKLLLTTPGIDTATGSYSEFGIPATILANYLRENGIVPEKCDLNSIL
FLLTPAEDIAKMQHLVALIARFEKHIEQNSLLSEVLPAVYKNHQQRYKNYTIRQLCQEMH
DLYVSYDVKELQKEMFRKSYFPRVVMNPQDANTEFVRGNVELVSLAKAEGRIAAEGALPY
PPGVLCVVPGEIWGGAAQRYFLALEEGINLLPGFAPELQGVYIQQDEDGWNRAYGYVMKN
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattaaaaattgccgccaacacccaaaccctcggctgctttgaaactgaacgc
gacatcgtcgatgtgcatcacagcgatttcaatgacgtcgccgccatcgtgctgtcggta
gacgacgtcgcgcaaggcatggtggcgcgcatcgaaggacacggcctgaacattccgctg
ttcgtcgccgtctgctgcgaagaagagctggataatgccgtcttgccggcgctgcacggc
gtgtttgagctgtgcggcaagaatacccagttctacggcaaacagctggaggccgccgcc
gccaaatatgagagcgagctgctgccgccgttcttcaacacgctgacgcagtatgtggaa
atgggcaacgccaccttcgcctgccccggccaccagggcggcgagttcttccgcaaacac
ccggcgggccgccagttcttcgacttctacggcgaaacgcttttccgctccgacatgtgc
aacgccgacgtcaaactgggcgatctgttgatccacgaaggcgcgccttgcgccgcgcag
cagcacgccgccaaggtgttcaacgccgacaagacctacttcgtgctcaacggcacctcg
gcctcgaacaaggtggcgaccaacgccctgctgacgcgcggcgacctggtgctgttcgac
cgcaacaaccataaatccaaccaccacggcgcgttgatccaggccggcgccacgccggtt
tatctggaaaccgcgcgcaacccgttcggctttatcggcggcatcgacgcgcactgcttc
gtcgaacgctacctgcgccaacagatccgcgaagtggcgccggaacgcgccaacgaagcc
cgcccgttccgcctggcgatcatccagctcggcacctacgacggcaccatctacaacgcc
cgccaggtggtcgacaaaattggccacctgtgcgactacatcctgttcgactctgcctgg
gtgggctatgagcagttcattccgatgatgaaagactgctcgccgctgctgctggagctg
aacgaaaacgatcccggcatcatcgtcacccagtcggtgcacaaacagcaggccggtttc
tcgcagacctcgcagatccacaaaaaagacaagcacatcaaggggcagagccgctactgc
aaccataagcgcttcaacaacgcctttatgctgcacgcctccaccagcccgttctacccg
ctgttcgccgcgctggacgtcaacgccaagatgcacgagggcaaaagcggccagcgcctg
tggcaagaatgtgtgcgcgtgggcatcgaagcgcgcaaaatgctgctggatacctgcacg
atgatcaaaccgttcgtgccggatcagatcgacggcaaaccgtggcaggcctatgacacc
gcggcgatggccaacgatctgcgcttcttcaacttcgtgcccggcgagaagtggcacgcc
tttgagggctatgccgagtcgcagtacttcgtcgatccgtgcaaactgctgctcaccacg
ccgggcatcgataccgcgaccggcagctacagcgagttcggcatcccggcgaccattctg
gccaactacctgcgcgaaaacggcatcgtgccggaaaaatgcgatctcaactcgatcctg
ttcctgctgacgccggcggaagacatcgccaagatgcagcacctggtggccctgatcgcc
cgcttcgagaagcacatcgagcaaaactccctgcttagcgaggtgctgcctgcggtctat
aaaaaccaccagcagcgctacaaaaactacaccatccgccagctgtgccaggaaatgcac
gacctttacgtcagctatgacgttaaagaactgcaaaaagagatgttccgcaaaagttat
ttcccgcgcgttgtgatgaacccgcaggacgccaataccgagttcgttcgcggcaatgtg
gaattggtctcgctggccaaggccgagggccgcatcgccgccgaaggcgccctgccttac
ccaccaggcgtgctgtgcgtggtgcccggcgaaatttggggcggcgccgcgcagcgttat
ttcctggcactggaagaaggcatcaacttattgccgggattcgcgccggaattgcagggc
gtttatatccaacaggatgaggacggctggaaccgcgcttacggctacgtcatgaaaaat
taa
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