Serratia nematodiphila: NLX84_05775
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Entry
NLX84_05775 CDS
T08619
Symbol
mrdA
Name
(GenBank) peptidoglycan DD-transpeptidase MrdA
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
snem
Serratia nematodiphila
Pathway
snem00550
Peptidoglycan biosynthesis
snem01100
Metabolic pathways
snem01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NLX84_05775 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NLX84_05775 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
snem01011
]
NLX84_05775 (mrdA)
Enzymes [BR:
snem01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
NLX84_05775 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
snem01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
NLX84_05775 (mrdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
UTO02586
LinkDB
All DBs
Position
complement(1240689..1242584)
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AA seq
631 aa
AA seq
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MKIERNPFRDYTAESALFVRRALVAFLVILVLSGILIANLYNLQVVRVEDYRTRSNENRI
KLVPIAPSRGIIYDRNGTPLALNRTIYQLELMPEKVDDLKATLQALRTVVDLTDDDIANF
EKERKRSRRFVFIPVKTALTEVQVARFAVNQFRFPGVEVKGYQRRYYPYGSALTHVTGYV
SKINDRDVERLDKDGKLANYAATHDIGKLGIERYYEDTLHGKTGYEEVEVNNRGRVIRQL
HEQPPSAGQDVYLTLDLDLQRYIEQLLVGSRAAVVVSDPRTGAILAMVSNPSYDPNLFVD
GISSKDYQGLLNDPNRPLINRATQGVYPPASTVKPYIAVSALSAGVITKNTVVFDPGWWQ
LPGSEKRFRDWKKWGHGRLNVTKALEESADTYFYQVAYDMGIDRLSSWLTKFGYGQYTGI
DLAEERSGLMPTREWKLKRYKKPWYQGDTIPVGIGQGYWTATPIQMAKALNTLINDGTVK
TPHLLQSTRVNGALVPFKQEESTQIGDIHSGFWEIAKDGMYGVANRPNGTARKYFADASY
KAAAKSGTAQVFGYETYNAHKLAEHLRDHKLMTAFAPFNNPTVSVAIILENGGSGPAVGT
ITRQILDHILLGDNNTQLPSEAPLPPGVEGD
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagaacgtaacccttttcgcgactatacggctgaatccgccctgtttgtacgc
cgcgccctggtggcgttcctggtcatcctggtgctgtccggcatcctgatcgccaacctg
tataatctgcaagtggtccgcgtcgaggattaccgcacccgctccaacgaaaaccgcatc
aaactggtgcccatcgcgcccagccgcggcattatctacgatcgcaacggcaccccgctg
gcgctcaaccgcaccatttatcagctggagctgatgccggagaaggtcgacgatctcaag
gccacgctgcaggcgctgcgcactgtggtcgatctgactgacgacgacatcgccaatttc
gaaaaagagcgcaagcgctcgcgccgtttcgtcttcattccggtgaaaaccgcgctgacc
gaggtgcaggtcgcccgctttgcggtcaatcagttccgcttccccggcgtggaagtgaaa
ggctaccagcgccgctactatccttacggatccgccctcacccacgtcaccggctatgtg
tcgaagatcaacgaccgcgacgttgaacgtctagacaaagacggcaagctggccaactac
gccgccacccacgatatcggcaagctgggcatcgaacgctattacgaagacacgctgcac
ggtaaaaccggttacgaagaggttgaagtcaacaaccgcggccgggtgatccgccaattg
cacgagcagccgccttccgccggccaggacgtctacctgacgctcgatcttgatctgcag
cgctatatcgaacagctgctggttggcagccgcgccgcggtagtggtgagcgatccgcgc
accggcgccatcctggcgatggtgtccaatccgagctacgatccgaacctgttcgtggac
ggcatttccagcaaggactatcagggtctgctgaacgatccgaatcgcccgctgatcaac
cgcgccacgcagggggtttatccgcccgcgtcgacggtgaaaccttatatcgccgtgtcg
gcactcagcgccggggtgatcaccaagaacaccgtagtgttcgatcccggctggtggcaa
ctgcccggctcggaaaaacgctttcgcgactggaaaaaatgggggcacggccgcctgaac
gtcaccaaagcgctggaagaatccgcggatacctacttctatcaggtcgcctatgatatg
gggatcgatcggctgtcgagctggctgaccaaattcggttacggccagtacaccggcatc
gatctggccgaagagcgctccggcctgatgccgacgcgcgaatggaagctgaaacgctat
aaaaaaccgtggtatcagggcgacaccattccggtgggcatcggccagggttactggacc
gccacgccgatccagatggccaaggcgctgaacaccctgatcaacgacggtaccgtcaaa
acgccgcacctgctgcagagcacccgcgttaacggcgcgctggtgccgttcaaacaggaa
gaaagcacgcagatcggcgatattcactccggcttctgggaaatcgccaaagacggcatg
tacggtgtggccaaccgtccgaacgggacggcgcgcaagtactttgcggacgcatcttat
aaagccgcggcgaaatcgggcaccgcacaggtcttcggttacgaaacctacaacgcccat
aaactggcggagcacctgcgcgatcacaagctgatgaccgcctttgcgccgttcaacaac
ccgacggtgtcggtcgccatcattctggaaaacggcggctccggtccggcggtgggcacc
atcacccgccagatcctcgaccatattctgctgggcgacaacaatacgcaattgccaagc
gaggccccgctgccgcctggcgtagaaggtgactaa
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