Serratia nematodiphila: NLX84_06880
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Entry
NLX84_06880 CDS
T08619
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
snem
Serratia nematodiphila
Pathway
snem00300
Lysine biosynthesis
snem00470
D-Amino acid metabolism
snem01100
Metabolic pathways
snem01110
Biosynthesis of secondary metabolites
snem01120
Microbial metabolism in diverse environments
snem01230
Biosynthesis of amino acids
Module
snem_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
NLX84_06880 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
NLX84_06880 (dapF)
Enzymes [BR:
snem01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
NLX84_06880 (dapF)
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Paralog
GFIT
Motif
Pfam:
DAP_epimerase
CntK_N
Motif
Other DBs
NCBI-ProteinID:
UTO02785
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All DBs
Position
complement(1460775..1461650)
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AA seq
291 aa
AA seq
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MTPLLFHKYHGLGNDYLVCHRSVADRLSHEQIRLLCHPHYGIGSDGLLIDSGDAVNPTLR
IINPDGSEAEKSGNGLRIYARYLFDSGRVGHQPFLVHTAGGDVRCQVAQDAHQITVEMGR
ANFSPAALPALIDLPEALNYPLPLREETLSVSLVSMGNPHCVVPVEKLDLAQVHRLGPQI
ERHPLFPKRTNVQLVEVVDRQTLRIGIWERGAGFTLASGSSSCAAASVMRKLGRVGDRVS
VRMPGGELQIAFSGDFQVSMRGPVHKIATLTLDEDCFAGGAGLFTGSTPAA
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgactcccctgctgttccacaaatatcacggtctgggcaacgactacctggtatgccac
cgttcggtcgccgatcggctgagccatgaacagatccgtctgctgtgccacccgcattac
ggcatcggttccgacggcctgctgatcgacagcggcgacgccgtcaatcccaccctgcgc
atcatcaacccggacggttccgaagcggagaagagcggcaacggcctgcgcatctacgcg
cgctatctgtttgacagcggccgcgtgggccatcaaccgtttttggtgcacaccgccggc
ggcgacgtgcgctgccaggtggcgcaagacgcgcatcagataacggtggaaatggggcgc
gccaatttcagcccggcggcgctgccggcgttgatcgatctgccggaggcgctgaactat
ccgctgcccctgagggaggagacgttaagcgtttcgctggtgtcgatgggcaacccgcac
tgcgtggtgccggtggaaaaactggatctggcgcaggtgcatcggctcggaccgcagatt
gaacgccatccgctgttcccgaaacgcaccaatgtacaactggtggaagtggtcgatcgc
cagacgctgcgcatcggcatctgggagcgcggcgccggttttaccctcgcctccggcagc
agcagctgcgccgccgccagcgtgatgcgcaagttgggacgagtcggcgatcgggttagc
gtgcggatgccaggcggcgagctgcagatcgccttcagcggcgattttcaggtcagcatg
cgcggaccggtgcataaaatcgccactctgacgctggacgaagattgtttcgccggcggc
gcagggctgtttacgggatccaccccagcagcctga
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