Serratia nematodiphila: NLX84_08600
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Entry
NLX84_08600 CDS
T08619
Symbol
ldtD
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
snem
Serratia nematodiphila
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
snem01002
]
NLX84_08600 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
snem01011
]
NLX84_08600 (ldtD)
Peptidases and inhibitors [BR:
snem01002
]
Cysteine peptidases
Family C82
NLX84_08600 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
snem01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
NLX84_08600 (ldtD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
UTO03092
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All DBs
Position
1828907..1830715
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AA seq
602 aa
AA seq
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MLLKKGNSLRRLALSGAIACSLVSSFSALATVTALPVASAGMSVAQSRSELLAALPRGMD
LHYLSTLAPLYAANHMQPMWQDREAVQQFQQQLAELAMSGVQPQFTQWVKMLTDPALSEA
GRDAVLSDAMLGYLQFVSAIGANGNNWLYSNIPYKLGLPPTAVINQWQLAVRQARTLSYV
NSLAPQHPQYAKMHQALRDMLADNRPWPQVGSGPSLRPGQMSNDIPALREILTRTGMLAA
SAPEAEPEPAVVSAKSNEPDDGGLTVDEEKSRVTVSPSAAPVTELTAEQTPPQIGSVVSD
NLYTNELVEGVKRFQKWQGLTADGVIGVRTREWLNVSPKTRAALLALNIQRLRILPGHVG
TGIMVNIPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTTLVRE
DIVPKAMRDGNYFQKHGYTVLSGWSNDAEVINPAMIDWSMVSARNFPYRVRQAPGATNSL
GRFKFNMPSSDAIYLHDTPNHSLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNNSRVS
STLKEGNTTYVNIRQRIPVKLYYLTAWVSDDGQPQFRTDIYNYDNTVRSGAQILAQAKKL
MQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttaaaaagggaaactctctacgacgtttggcgctgagtggcgctatcgcctgt
agtcttgtgtcgtcgttttccgccttggccaccgtaacggcgttaccggtggcatcagca
ggcatgtccgttgcgcagagtcgttctgaactgctggccgcgttgccgcgcggtatggat
ctgcactacctttccacgctggcgccgctgtatgcggcgaatcatatgcagccgatgtgg
caggatcgcgaggccgttcagcaatttcaacagcagctggccgaactggcgatgtccggc
gtacagccgcagttcacccagtgggtgaagatgttgaccgatccggcgctcagtgaagcg
ggccgcgatgcggtgttgtccgatgcgatgctgggctatttgcagtttgtatccgccatc
ggcgccaacggcaacaactggctgtacagcaatattccttacaagcttggtttgccaccc
acggcggtgatcaatcaatggcagctggcggtgcgccaggcgcgaaccctgagctacgtg
aattcgcttgcgccgcagcatccgcaatacgccaagatgcatcaggcgctgcgtgacatg
ctggcggacaaccgcccctggccgcaggtgggcagtggcccgagcctgcgcccaggccaa
atgagcaacgatatcccggcgctgcgtgagatcctgacgcgcaccggcatgctggccgcc
tcggcgccggaagcggagccggaaccggcggtggtttcggcgaagagcaatgaacccgac
gacggcgggctgacggtagacgaagagaaaagccgcgtgacggtcagcccatcggcggcg
ccggtgacggagttgaccgcggaacagacgccgccgcagatcggcagcgtggtgagcgac
aacctctataccaacgagctggtggagggcgtcaagcgtttccagaaatggcaggggttg
acggcggacggcgtgatcggcgtgcgcacccgcgagtggctcaacgtgtcaccgaaaacc
cgcgccgcgctgttggcgctgaatatccagcgcttgcgcatcttgccggggcatgtcggc
accggcattatggtaaacattcccaactactcgctgacctactatcagaacggcaacgaa
gtgttgtcctcccgcgttatcgtcgggcggccgagccgcaagacgccgttgatgagcagc
gcgttaaacaacgtggtggtcaacccgccttggaacgtgccgactacgctggtgcgtgag
gatatcgtgccgaaggcgatgcgcgacggtaactatttccagaaacacggctataccgtg
ctgtcaggctggagcaacgatgcggaagtgatcaacccggcgatgatcgactggagcatg
gtttctgcgcgcaacttcccgtatcgcgtccgtcaggcgccgggggccaccaactcgctg
gggcgtttcaagttcaatatgccgagctcggatgccatctacctgcacgataccccgaac
cacagcctgttccagaaagacatccgcgcgctcagctccggctgcgtgcgggtgaacaag
gcttccgatttggcgaatatgctgctgcaggatgccggctggaacaatagccgcgtttcc
tccacgctgaaagaaggcaataccacttatgtgaatattcgccagcgtattcccgtaaaa
ctgtattatctaaccgcctgggtttcggatgatggccaaccgcaattccgtacagatatt
tacaattatgataatacggtgagatcgggcgcacaaattttggctcaggccaaaaaatta
atgcagtaa
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