Serratia nematodiphila: NLX84_09360
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Entry
NLX84_09360 CDS
T08619
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
snem
Serratia nematodiphila
Pathway
snem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLX84_09360 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snem03019
]
NLX84_09360 (rne)
03009 Ribosome biogenesis [BR:
snem03009
]
NLX84_09360 (rne)
Enzymes [BR:
snem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NLX84_09360 (rne)
Messenger RNA biogenesis [BR:
snem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NLX84_09360 (rne)
Ribosome biogenesis [BR:
snem03009
]
Prokaryotic type
rRNA processing factors
NLX84_09360 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UTO03228
LinkDB
All DBs
Position
complement(1978582..1981914)
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AA seq
1110 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAVIVPNDQMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEDMERPLEDAPMERKRPEQPALASFSLSADAPP
PAEEPVTVAKPVAAAAKVKAAAPVAAKPGFLGRLFGGLKSLFAGEEQPAVEEAKPAETPK
AEGNGENRRQDRRGQRRQGTGRKERGERGERPERGERKERGEGRDNRERDNREPRENREG
RESRESRDEQRRNRRNQQQNAPVAEETASEESAKAPREDQQQRREQRAERQRRRQEEKRQ
AQQEVKALESVEAVESTDEEQEERQQQNMQRRQRRTLTQKVRILSAEEELQRAAEELLAP
KAPVAKAEDVQPTADDSVKLLPETVAAQPEDDAQGESRGNGEGMPRRSRRSPRHLRVSGQ
RRRRYRDERYPLQSPMPLAGAFASPEMASGKVWVSYPVAQVEEAEVQTEAVEQAPVVAAA
VEQHNVAVEETQAAASVNEPAPEAAVETAAVTVTEEAAAVAPVVAIPAEETPAPAEAAVE
EPKVEETAPAVESEPVVETVAAEPVVEAKSVEDEPVVETAPVEAEPAEETPVVEAAPAAA
AVEAAPVETAPAPVVAQQPAPVKAVQNVLYKHIATAPMTKAPAPAYVPEERKHSDWQRPS
FNFEGKGSAGGHSAVSQATAPATKPQPVNE
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccctcgtagat
ggacagcggctgtatgatttggatatcgaaagtccgggtcatgagcaaaaaaaagcgaat
atttacaaaggcaaaatcacccgcattgaaccaagtcttgaagcagcgttcgtggattac
ggcgcagaacgacatggtttcctcccccttaaagaaatcgcccgcgaatacttccctagc
aattactcttcccatggtcgcccgaacatcaaagatgtgctgcgcgaaggccaggaagtc
attgttcaggtagacaaagaagaacgtggcaacaaaggcgccgccttgaccaccttcatc
agcctggcgggcagctatctggtgttgatgccgaacaacccgcgcgccggcggtatttct
cgccgcatcgagggtgacgatcgcaccgagctgaaagaagcgctctcttcgctgcagctg
ccggacggcatgggcctgatcgttcgcaccgcgggcgtaggcaaatctgccgacgcgctg
cagtgggatctttccttccgtctgaagcactgggaagcgattaaaaaagccgccgaaggc
cgccctgcgccgttcctgatccaccaggaaagcaacgttatcgtgcgcgccttccgcgac
tacctgcgcccggacatcggcgaaatcctgatcgacaacccgaaaattctcgatctggcc
aaagagcacatcgctgcgctgggccgcccggatttcagcagcaaaatcaaactgtacagc
ggtgaaattcccctgttcagccactaccagatcgaatcgcagatcgaatccgccttccag
cgcgaagtgcgcttgccgtccggcggctcgatcgtcatcgacagcaccgaagcgctgacc
gccatcgacatcaactccgcgcgcgcaacccgcggcggcgacatcgaagagacggcgttc
aacaccaacctggaagcggcggacgagatcgctcgccagctgcgcctgcgcgacctcggc
ggcctgatcgtcatcgacttcatcgacatgacgccggtacgccaccagcgcgaagtggaa
aaccgcctgcgtgacgccgtgcgccaagaccgcgcgcgcatccaaatcggccgcatctcc
cgcttcggcctgctggaaatgtcgcgtcagcgcctcagcccgtcgctgggcgagtccagc
caccacgtatgcccacgctgtaacggcaccggcaccattcgcgacaacgaatcgctggcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaggaaaacaccaaagaagttcac
gctatcgtgccggttcaggtcgcttcgtacctgctgaacgaaaagcgcgaatccgtcagc
gcgatcgaaaaacgccagggcggcgtgaaagccgtcatcgtgccgaacgatcagatgcaa
actccacactactctgtgctgcgcgtgcgcaagggcgaggaaacctctaccctcagctac
ctgctgccgaagctgcacgaagaagacatggagcgcccgctggaagatgcgccgatggaa
cgcaagcgtccggagcaaccggccctggcttccttctcgctgtccgccgatgcgccgccg
ccggctgaagagcccgtcaccgtggccaaacctgtcgctgccgccgccaaggtgaaagcc
gcagcgccggtcgccgccaagccgggcttcctgggccgcctgttcggtggtctgaagagc
ctgttcgccggtgaagaacaacctgccgtcgaagaagccaaaccggccgaaacgccgaaa
gcggaaggcaacggtgaaaaccgtcgtcaggatcgtcgcggtcagcgccgccaaggcacc
ggccgtaaagagcgcggtgagcgtggcgaacgtccggaacgcggcgagcgtaaagagcgc
ggtgaaggccgtgacaatcgcgagcgcgacaaccgtgaaccgcgtgaaaaccgtgaaggc
cgtgaatcgcgtgagtcccgcgatgagcagcgccgtaaccgccgcaaccagcagcagaac
gcgccggtagcggaggaaaccgcttcggaagaaagcgctaaagcgccgcgcgaagatcag
cagcaacgccgtgagcagcgcgctgaacgccagcgtcgccgtcaggaagagaaacgtcag
gctcagcaggaagtgaaagcgctggaaagcgttgaagcggtcgagagcaccgacgaagag
caggaagaacgtcagcagcagaacatgcagcgccgtcagcgccgcacgctgacgcagaaa
gtgcgtatcctgtctgccgaagaagagctgcagcgcgcagcggaagagctgttggcgccg
aaagcgccggtagcgaaagccgaagacgtgcagccgaccgccgacgacagcgtcaagctg
ctgccggaaaccgttgccgcacagccggaagacgatgcccagggcgaaagccgcggcaac
ggcgaaggcatgccgcgccgttcccgccgttcaccgcgccacctgcgcgtcagcggccag
cgccgccgtcgttaccgcgatgagcgttacccgctgcaatctccaatgccgctggcgggt
gccttcgcttcgccggaaatggcatcgggcaaagtctgggtaagctacccggtcgctcag
gttgaagaagccgaagtgcagaccgaagccgtagagcaggcgccggttgtagccgcagcg
gttgaacaacacaacgttgccgtggaagaaacccaggccgcggccagcgtcaacgaaccg
gcaccagaagccgccgttgaaactgccgccgttaccgtcacggaagaagctgcagccgta
gcgcctgtcgttgctatcccggccgaggaaaccccggcgccggcggaagccgcggttgaa
gagccgaaagtggaagagactgccccggcagtggaatccgagccggtagttgaaaccgtt
gctgcagagcctgtagttgaagctaagtcggtggaggacgagcctgtggtcgaaactgcg
ccggtagaagccgagccggcggaagaaacgccagtggtagaagctgcacctgcggcggca
gccgtggaagccgctccggtggaaacagcccctgcgccagtggttgctcagcagccggcg
ccggtgaaagccgtgcagaacgtgctgtacaaacacatcgccactgcgccgatgaccaaa
gcgccggcaccagcctatgtgccggaagaacgcaagcacagcgactggcagcgcccttcc
ttcaacttcgaaggcaaaggctccgcaggcggccattcggcggtaagccaggcgaccgcg
ccggccaccaaaccgcagccggttaacgaataa
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