Serratia nematodiphila: NLX84_13285
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Entry
NLX84_13285 CDS
T08619
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
snem
Serratia nematodiphila
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snem03016
]
NLX84_13285
Enzymes [BR:
snem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NLX84_13285
Transfer RNA biogenesis [BR:
snem03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NLX84_13285
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
UTN99429
LinkDB
All DBs
Position
2787305..2789239
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKEAIPCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTQFITNGEDHFAPWWVTLARHNLEKEAPEMQAL
SEPNAALVREDLTALEFVTIDSASTEDMDDALYVTDNADGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIAADGALGDDIQF
FAAEIESKAKLVYDEVSDWLEGIAGWQPPSDAIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGDVLEIVTEQRRSANRIVEECMIAANVCAAIVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEAEAEKLLTLEGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIINQQSAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVQIKGEVVYRQSDTLQVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtcgtgaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagttacttcattccaccgccgtacatgaagaaagtcatgcacggggatcgcatt
atcgccaccctgcacaccgagaaagagcgcgaaatcgccgagccggaaaccctggtcgag
ccgttcctgtcgcgctttgtcggccgcgtgcaaaagcgcgacgatcgtctgtccatcgtg
cccgatcatccgttgctgaaagaggcgattccgtgccgcccggtgcgtgaattgacccac
aacttccaggctggcgactgggcggtggcggaaatgcgccgccatccgctgaaaggcgat
cgcggcttcaacgccgatctgacccagtttatcaccaacggtgaagaccatttcgccccg
tggtgggtgacgctggcgcgtcacaacctggaaaaagaggcgccggagatgcaggccctc
agcgagccgaacgcggcgctggtgcgtgaagatctgaccgcgctcgaattcgtcaccatc
gacagcgccagcaccgaggacatggacgatgcgctgtacgtgaccgacaacgctgacggt
tcgctgcagttgaccatcgccatcgccgatccgaccgcctacgtcgagcaaggcagcaag
ctggacgatatcgcccgcgtgcgcgccttcaccaactacctgccgggctttaacatcccg
atgctgccgcgcgatctgtcggacaacctgtgctcgctgcgccctaatgagcgccgccag
gtgctggcctgccgcgtaaccatcgccgccgacggcgcgctgggcgacgatattcagttc
ttcgccgccgagatcgaatccaaagccaaactggtgtacgacgaagtttccgactggctg
gaaggcattgccggctggcagccgccgagcgacgccatcgcacaacagatcaccctgctg
aaacgcgtttgcgacgcgcgcaacgcctggcgtcaccagcatgcgctggtattcaaagat
cgcccggactaccgcttcgtgctgggtgaaaaaggcgacgtgctggagatcgtcaccgag
cagcgccgcagcgccaaccgcatcgttgaagagtgcatgatcgccgccaacgtctgcgcc
gccatcgtgctgcgcgatcgcctgggcttcggcgtgtacaacgtgcacaccggtttcgat
cctgcgctggttgagcaagcggtcaccgtattgcaggctaacggcgtggaagccgaagcc
gaaaaactgctgacccttgagggcttctgcgaactgcgccgccatctggatgcgcagccg
actcagttccttgacagtcgtatccgtcgcttccaaaccttcgcggagatcagcaccacg
ccggggccgcacttcggtctggggctggaggcttacgccacctggacatcgccgatccgt
aaatacggcgacatggtcaaccatcgcctgctgaaggcaatcatcaaccagcaatcggcc
gaaaaaccgcaggatgacgtaacggtgcagctggcggaacgccgccgcctgaaccgcatg
gcggaacgcgacgtcggcgactggctgtacgcccgcttcctgcaggacaaggccggtacc
gatacccgcttcaacgccgagattatcgacgtgacacgcggcggcctgcgtgtgcgcctg
ctggacaacggcgcggttgccttcatcccggcgccgtttattcacgcggtgcgtgacgag
atgcagtgcagccaggaaaccggcaccgtgcagatcaaaggtgaagtggtttaccgccag
agcgacaccttgcaggtcaccatcgctgaagtgcgcatggaaacccgcagcgtaatcgcc
cgccctgcggcctga
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