Serratia nematodiphila: NLX84_18360
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Entry
NLX84_18360 CDS
T08619
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
snem
Serratia nematodiphila
Pathway
snem03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NLX84_18360 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snem03000
]
NLX84_18360 (alkA)
03400 DNA repair and recombination proteins [BR:
snem03400
]
NLX84_18360 (alkA)
Enzymes [BR:
snem01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
NLX84_18360 (alkA)
Transcription factors [BR:
snem03000
]
Prokaryotic type
Helix-turn-helix
AraC family
NLX84_18360 (alkA)
DNA repair and recombination proteins [BR:
snem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NLX84_18360 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
RecR_HhH
HTH_23
DUF1952
Motif
Other DBs
NCBI-ProteinID:
UTO00336
LinkDB
All DBs
Position
complement(3855857..3857347)
Genome browser
AA seq
496 aa
AA seq
DB search
MQKKPTPSVAMNTQQQALYDALRARDRKFDGRFFVGVSSTGIYCRPVCSARTPKLENCTF
YPSAAAAELAGFRPCLKCRPELAPGLALIDLGNRYAQVAVQLIEQGYLSEHSCEALAARL
GISDRHLRRIFAEQFGASPIDYAQSHRLLQAKRLLADTDLPLSEVAFAAGFGSLRRFNEL
FKARYRLIPSALRSGGARGERAAASGLVFHLGYRPPYDWERMLNFLQARAVQGVERVDGR
RYLRSIAVSQGGTEHRGWVSVQPEEARNRVRVEIAPALSLVTTEVLRRVRLLFDLDAAPD
RINEALGSLAADAPGLRLPGCVNSFEQAARAVLGQLVSVKMAATFAGRMAERWGEALATP
HEGITHVFPTAERVAQLQPEELRPLGVQLKRAAALIEIARALGEGRLQLDNVLDIEQGIE
ALTALPGIGSWTASYIAMRAWSWPDVFLAGDYLIKQRFPGMTPRQIERYAERWRPWRSYA
TLHLWHNGGWAPEGES
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaaccgaccccgagcgttgccatgaatactcaacagcaagcgttgtacgac
gcgctgcgcgcgcgtgaccgcaaattcgacggccgttttttcgtcggcgtctcttccacc
ggcatctattgtcgcccggtgtgcagcgcccgcacgccgaagctggaaaactgcaccttt
tatccgagcgcggcggcggcagagttggcgggatttcgcccctgcctcaaatgccgaccg
gaactggcgcccggcctggcgctgatcgacctgggcaaccgctatgcgcaggtggcggtg
cagctcatcgagcagggctatctgtctgaacacagctgcgaagcgctggcggcgcggctg
ggcatttccgatcgccatctgcggcgcattttcgccgaacagtttggcgcctcaccgatc
gattacgcgcagtcgcatcggctgctgcaggccaaacgcctgctggcggacaccgatctg
ccgctcagcgaggtggcgttcgccgccggattcggcagcctgcggcgtttcaacgagctg
ttcaaggcgcgctatcgcctgatcccgtcagcgctgcgcagcggcggcgcgcgcggtgaa
cgggccgccgccagtgggctggtgtttcacctgggctatcggccgccctatgactgggag
cgcatgctgaatttcttgcaggcgcgcgccgtgcagggcgtggagcgggtcgacggacgc
cgctacctgcgctcgatcgccgtcagccagggcggcacggaacaccgcggctgggtcagc
gtgcagccggaagaagcgcgcaatcgggttcgggtagagatcgcgcctgcgctcagtctg
gtgacgacggaggtgttgcgccgggtgcgcctgctgtttgatctggatgccgcgccggat
cgcatcaatgaggcgctgggttcgctggcggccgatgcgccgggattgcgcctgccgggc
tgcgtgaacagtttcgagcaggcggcgcgggcggtgctgggccagttggtcagcgtaaaa
atggcggcgaccttcgccgggcggatggctgaacgctggggggaagccctggcgacgccg
catgagggcatcacccatgtcttccccaccgcagaacgggtggcgcagctgcagcccgaa
gaactgcgcccgctcggggtgcagctgaagcgcgcggcggcgctgatcgagatcgcccgc
gcgctgggcgaagggcggctgcagctcgataacgtgctggatatcgaacagggcatcgag
gcgctgaccgcgctgccgggcatcggcagctggaccgccagctatatcgcgatgcgcgcc
tggtcgtggccggacgtgttcctggccggcgattacctgatcaaacagcgttttcccggc
atgacgccgcgccagatagaacgctacgctgaacgttggcgcccgtggcgttcttacgcc
acgctgcatctgtggcacaacggcggctgggcgccggaaggggagagttga
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