Serratia nematodiphila: NLX84_19605
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Entry
NLX84_19605 CDS
T08619
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snem
Serratia nematodiphila
Pathway
snem03030
DNA replication
snem03430
Mismatch repair
snem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLX84_19605 (dnaE)
03430 Mismatch repair
NLX84_19605 (dnaE)
03440 Homologous recombination
NLX84_19605 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snem03032
]
NLX84_19605 (dnaE)
03400 DNA repair and recombination proteins [BR:
snem03400
]
NLX84_19605 (dnaE)
Enzymes [BR:
snem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NLX84_19605 (dnaE)
DNA replication proteins [BR:
snem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NLX84_19605 (dnaE)
DNA repair and recombination proteins [BR:
snem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NLX84_19605 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UTO00569
LinkDB
All DBs
Position
complement(4110426..4113914)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKTAPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEELGDELAQLTVLASNNEGYQNLTLLISRAYQRGYGAAGPTIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQAQVDQCLDFYQQHFPDCYYLELIRTGRQDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGREAVSQIITFATMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKARGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANIAPWPEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKRGNRIGICT
LDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREVMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVDLEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgtccacagtgactactccatgattgatgga
ttggccaagacggcgccgctggtgaaaagagccgccgcgttagccatgcctgcactggca
atcaccgatttcaccaacctgtgcgggctggtgaaattctacggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggatttccatgtgcaaagcgaagagctgggcgatgaa
ctggctcagttgacggtgctggccagcaacaacgaaggctaccagaacctgacgctgctg
atttcccgcgcctatcagcgtggctacggcgccgccggcccgaccatcgatcgcgactgg
ctgattgaacatcgcgaagggctgatcctgctctccggtgcgcgtcagggcgacgtcggc
aagtttctgctgcgcggcaaccaggcgcaggtggatcagtgtcttgatttctaccagcag
catttcccggactgttactatctggaactgatccgcaccggccgtcaggacgaagagaac
tacctgcatgcggcggtggcgctggccactgagcgcggcttgccggtggtggccaccaac
gacgtgcgcttcctggtggaagatgacttcgacgcccatgagattcgcgtcgccattcac
gacggctttacgctggacgatcccaagcggccgcgtaactacagcccgcaacagtacatg
cgcagcgaagacgagatgtgcgaactgttcgccgacatcccggaagcgctgctgaacagc
gtcgaaatcgccaagcgctgcaacgtcaccattcgcctcggcgaatacttcctgccgcag
ttcccgaccggcgatatgagcaccgaggacttcctggtgctcaaatcgaaagaggggctg
gaagagcgtctggagttcctgttccccgatcctgaagtgcgcgcgcagcgccgcccggaa
tatgacgagcgtctggacgtagagctgaaggtgatcaaccagatgggcttccccggctac
ttcctgatcgtgatggagtttatccagtggtcgaaggacaacaacgtgccggtgggcccg
gggcgcggctccggcgccggttcgctggtggcctatgcgttgaaaatcaccgacctcgat
ccgctggagttcgatctgctgttcgaacgcttcctgaacccggaacgtgtctcaatgccc
gacttcgacgtcgacttctgcatggagaagcgtgaccaggtgatcgagcacgtggcggag
atgtacggccgcgaagcggtatcgcagatcatcaccttcgccaccatggcggcgaaagcg
gttatccgcgacgtgggccgcgtgctggggcacccgtacggcttcgtcgatcgcatttcc
aagctggtgccgccggatccgggcatgacgctggagaaagccttcgccgccgaaccgcag
ctgccggaaatttacgaggccgacgaagaggtcaaggcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgtaacgccggtaaacacgccgggggcgtggtgatcgcgccgacc
aagatcaccgacttcgcgccgctgtactgcgatgccgaagggaaccacccggtgacccag
ttcgacaagaacgacgtggaatacgccgggctggtgaagttcgacttcctcggtctgcgc
accctgaccatcatcgactgggcgctggagatgatcaacgcccggcgcgccaagaccggg
ctggaaccgatcgacatcgccgccatcccgctcgatgacaagaaaagtttcgacatgctg
cagcgctcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaagatttgatc
aaacgtctgaagcccgactgcttcgaagacatgatcgcactggtggcgctattccgtccg
gggccgctgcagtcgggcatggtggataacttcatcgaccgcaaacacggccgtgaagag
atctcctacccggacattcagtggcagcacgagtcgctcaagccggtgctggagccgacc
tacggtatcatcctgtatcaggaacaggtgatgcagattgcccaggtgctggccggttat
acgctgggcggagcggacatgctgcgccgtgcgatgggtaaaaagaacccggtcgaaatg
gccaagcagcgcggcggctttgaagacggcgccaaagcgcgcggcatcgacggcgaactg
tcggtgaaaatcttcgacctggtggagaaattcgccggttatggcttcaacaaatcgcac
tccgccgcctatgcgctggtgtcgtaccagacgctgtggctgaaggcccactacccggcc
gagtttatggcggcggtgatgaccgccgatatggacaacaccgacaaagtggtgggtctg
gtggacgaatgctggcgcatggggctgaagatcctgccgccggacatcaacagcggcctg
tatcacttccacgtcaacgacgacggcgagatcgtttacggcatcggcgccatcaagggc
gtaggggaagggccaatcgaggcgatcatcgaggcgcgcaacagcggcgaacaaggttac
ttcaaagacctgttcgatctctgcgcgcgctccgacatcaagaaactgaaccgccgcatt
ctggaaaaactgatcatgtccggggcgttcgatcgccttgggccgcatcgcgccgcgctg
atgaattcgctcggcgacgcgttgaaagcggcggatcagcatgcgaaagccgaagctatc
ggccaggtggatatgtttggcgtgctggcggaagcgccggagcaggtggagcaatcctac
gccaatatcgcgccctggccggagcaggtggtgctggacggtgaacgggagacgctgggg
ctgtacctgaccggccacccgatcacccagtacctgaaggagatcgaacgttacgccggt
ggccagcgtttgaaagacatgcacccgacggatcggggcaaaatgactaccgccgtcggg
ttggtggtcgccgcgcgggtgatggtgaccaagcgcggcaaccgcatcggcatctgcacg
ctggatgaccgttcgggccgtctggaagtgatgttattcaccgaagcgttagaaaaatac
cagcatttgttggaaaaagaccgtatccttatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgatggcccgcgaggtaatggacatcagtgaagcccgggaa
aaatacgctcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctctac
tatcaacgggaagatgcgcgagccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatcgacttgcggacgttggtaggcaatgagcaggtggacttggaa
tttgactaa
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