Serratia nematodiphila: NLX84_24010
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Entry
NLX84_24010 CDS
T08619
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
snem
Serratia nematodiphila
Pathway
snem02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NLX84_24010 (pdeR)
Enzymes [BR:
snem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
NLX84_24010 (pdeR)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
GGDEF_2
PAS_10
Cas10-Cmr2_palm2
PAS_3
Motif
Other DBs
NCBI-ProteinID:
UTO01372
LinkDB
All DBs
Position
5049344..5051338
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AA seq
664 aa
AA seq
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MPADQGPELLSAHFGTQSPHWRLAFDSNALELSAIKGKAHVAVALSAMEAAKIRRLTGVT
ASLELTITLAGEPLHLHLVGRRVNNLEWAGTASAFSDTQSVARDLVHGLSFAEQVVSEAN
SVIVIVDQHGRIQRFNRLSEEYTGLHEHEVIGKNVFQLFMSPEEAAASRRNIAGFFRNGS
SYEVERWVKTVKGERLFLFRNKFVHSGSGKNEVFLICSGTDITEERRAQERLRVLANTDL
ITGLPNRNAIQDKINHAIATRGEESFGLVYLDLDNFKKVNDAYGHMFGDRLLVEVALAIL
GCLSPDQVLARLGGDEFLVLAPQSDRERLQTLAQRIIDRLKTPFRIGLIEVYTGCSIGIA
LCPEHGNDLDSLIRSADTAMYVAKEHGKRTYTVFSPEMNKRVAEYMWLDTNLRKGLEQNQ
LVLYYQPKIDAHSGEVHSVEALVRWDSPERGLIPPLQFISYAEESGLIGPLGQWVLQTAA
GQAAQWQEQGLNLRVAVNLSARQLADDSIVNDLLGVLHRHRMAPCLLDFELTESSLIEDE
NRARALITRLRELGAQVHLDDFGTGYSSLAQLARIPLDAIKLDKSFVRGVNFNPVSQSLV
RAIVAAAEALAFRVIAEGVETESENHFLDEVGVDEKQGFLFARPMLPEQLEHWLQSYRPR
SPSA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagaccaaggccctgagcttcttagcgctcacttcggcacccaaagcccccac
tggcggctggcgtttgacagcaatgccctggagctgtccgctattaagggcaaagctcat
gtcgcggtggcgctcagcgccatggaagcggcgaaaatccgccgtctgaccggcgtgacc
gccagccttgagctgaccattacgctagccggtgaaccgctgcatctgcatctggtcggg
cgccgcgtcaacaacctcgaatgggcgggcaccgcttccgccttcagcgacacccaatcc
gtggcgcgcgacctggtgcatggcctctccttcgccgagcaggtggtgtccgaagccaac
tcggtgatcgtgatcgtcgatcagcacggccgcatccagcgcttcaaccggctgagcgag
gagtacaccgggctgcacgaacacgaggtgatcggcaaaaacgttttccaactgtttatg
agcccggaagaagccgccgcttcgcggcgcaacatcgccggcttcttccgcaacggttcg
tcctatgaggtggaacgctgggtaaagacggtcaagggtgaacggctgttcctgtttcgc
aacaaattcgtgcacagcggcagcggaaaaaacgaagtctttctgatctgctccggtacc
gacatcaccgaagaacgccgcgcgcaagagcggctacgggtgctggccaacaccgatctc
atcaccggcctgccgaaccgtaacgccatacaagacaagatcaatcacgccatcgccacg
cgcggcgaagagagtttcggcctggtgtacctcgatctcgacaacttcaaaaaggtcaac
gacgcctacggccatatgttcggcgatcggctgctggtcgaggtcgcgctggcgatcctc
ggctgcctgagcccggatcaagtgctcgcccgcctcggcggcgacgaattcttggtgctg
gcgccacaaagcgatcgcgagcgcctgcaaacgctggcgcagcgcattatcgacaggctg
aagaccccttttcgcatcggcctgattgaggtgtataccggctgttcgatcggcatcgcg
ctgtgcccggagcacggcaacgatctcgacagcctgatccgcagcgccgataccgccatg
tacgtcgccaaggagcacggaaaacgcacctataccgtcttctcgccggagatgaacaaa
cgcgtcgccgagtacatgtggctggacaccaatctgcgcaaagggttggagcaaaatcag
ctggtgctgtattaccagcctaaaatcgacgcgcacagcggtgaagtgcacagcgtggaa
gcgctggtgcgctgggattcgccggagcgcggcctgatcccaccgctgcagttcatctcc
tacgccgaggagtccggcctgatcggcccgctgggccaatgggtgctgcaaaccgccgcc
gggcaggcggcgcagtggcaagagcagggattgaatctgcgggtggcggtcaacctctct
gcccgtcagctggccgatgacagcatcgtcaacgacctgctcggggtgctgcaccgtcac
cgcatggccccctgtctgctggacttcgagttgaccgaaagcagcctgattgaagacgag
aatcgcgcgcgcgcgctgatcacccggctgcgcgaactgggcgcgcaggtgcatctcgac
gactttggcaccggctattcgtcgctggcgcagctggcacgtattcctctggacgccatc
aagctggataaaagcttcgtgcgcggggtgaatttcaatccggtatcgcaatcgctggta
cgcgcgatcgtcgcggcggcggaggcgttggccttccgcgtgatcgccgaaggagtggag
accgagagcgaaaaccacttcctcgacgaagtcggcgtggacgaaaaacagggctttctg
ttcgcgcggccaatgctcccggaacagctggagcattggctgcagtcctatcgcccgcgc
tcaccctccgcatga
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